View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1698-Insertion-6 (Length: 91)

Name: NF1698-Insertion-6

Description: NF1698

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1698-Insertion-6

[»] chr4 (3 HSPs)

Target: chr4 (Bit Score: 84; Significance: 2e-40; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 84; E-Value: 2e-40

Query Start/End: Original strand, 8 - 91

Target Start/End: Complemental strand, 43596454 - 43596371

Alignment:

Q	8	atatgatcatatttatttgagtttggagcttttctcattgagagataataaccggaaagaacttaagggtactaatttccctta	91	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43596454	atatgatcatatttatttgagtttggagcttttctcattgagagataataaccggaaagaacttaagggtactaatttccctta	43596371	T

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Target: chr4; HSP #2

Raw Score: 36; E-Value: 0.000000000007

Query Start/End: Original strand, 28 - 91

Target Start/End: Original strand, 48891494 - 48891557

Alignment:

Q	28	gtttggagcttttctcattgagagataataaccggaaagaacttaagggtactaatttccctta	91	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	48891494	gtttggagtttttctcattgagagataatatgtggaaagaaattgagggtacttatttccctta	48891557	T

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Target: chr4; HSP #3

Raw Score: 31; E-Value: 0.000000007

Query Start/End: Original strand, 29 - 91

Target Start/End: Complemental strand, 45372067 - 45372005

Alignment:

Q	29	tttggagcttttctcattgagagataataaccggaaagaacttaagggtactaatttccctta	91	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	45372067	tttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttccctta	45372005	T

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