View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16980_high_1 (Length: 432)
Name: NF16980_high_1
Description: NF16980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16980_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 45279497 - 45279078
Alignment:
| Q |
1 |
atcaaggcctaaagatgcctatgaaatgcctcgtgaagctgttaaggtggaagattattgattctaatgaatataggtcatagctttattattcattaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45279497 |
atcaaggcctaaagatgcctatgaaatgcctcgtgaagctgttaaggtggaagattattgattctaatgaatataggtcatagctttattattcattaat |
45279398 |
T |
|
| Q |
101 |
tcaatttgtgtgtg--actttagaggtgtgaagctatgatgatagtatagttgaaaaatatgtacatgttacattgtgaccggttgttaagaagtgcatt |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45279397 |
tcaatttgtgtgtgtgactttagaggtgtgaagctatgatgatagtatagttgaaaaatatgtacatgttacattgtgaccggttgttaagaagtgcagt |
45279298 |
T |
|
| Q |
199 |
ctgtgtttgcaagttcaatgttgtttcaggatttattattgtgttagctctaattatactttaagccaattcttcttctatgatgattatgcattttgta |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45279297 |
ctgtgtttgcaagtttaatgttgtttcaggatttattattgtgttagctctaattatactttaagccaattcttcttctatgatgattatgcattttgta |
45279198 |
T |
|
| Q |
299 |
gatgacagcaacaagaataaccaataagcttcacaataggaacttttttggtcaaacaacaaacagaagtcacttccatgttttgtggnnnnnnnnnctt |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45279197 |
gatgacagcaaccagaataaccaataagcttcacaataggaacttttttggtcaaacaacaaacagaagtcacttccatgttttgtggtttttt----tt |
45279102 |
T |
|
| Q |
399 |
ttcctgttaacattactccctttg |
422 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45279101 |
ttcctgttaacattactccctttg |
45279078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University