View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16980_high_2 (Length: 381)
Name: NF16980_high_2
Description: NF16980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16980_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 2473999 - 2474364
Alignment:
| Q |
8 |
cgaagaatattaatccagtgaactaactaactaactaaggtttcatatgatgaacatactcaactgaaatatctatgtgatgaagtcgagaggtgcctct |
107 |
Q |
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| T |
2473999 |
cgaaaaatattaatccagtgaactaactaactaag---ggtttcatatgatgaacatactcaactgaaagatctatgtgatgaagtcgagaggtgcctct |
2474095 |
T |
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| Q |
108 |
ttatcttatttattgcgtaactaccttagcctttgatagtgacttgtaagtgtttcatgtttttgcttcaaaccatccaattcaattttcactttttcaa |
207 |
Q |
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| T |
2474096 |
ttatcttatttattgcgtaactaccttagcctttgatagtgacttgcaagtgtttcatgtttttgcttcaaaccatccaattcaattttcactttttcaa |
2474195 |
T |
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| Q |
208 |
tctgtttcttgtgcaattgtccatgcaactgttgaagataaattaaaattagttgactgaaagacttgcattagacatcctttacattaca-------tc |
300 |
Q |
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| T |
2474196 |
tctgtttcttgtgcaattgtccatgcaactgttgaagataaattaaaattagttgactgaaagacttgcattagacatcctttacatcaaaggccttgta |
2474295 |
T |
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| Q |
301 |
aa---aggcatgttttacgtataggtcgtcaaaatagttcaaaatacaagatgtttttggatttggagt |
366 |
Q |
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| T |
2474296 |
aaatgagttatgtttcacgtataggtcgtcaaaattgttcaaaatacaagatgtttttggatttggagt |
2474364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 2470779 - 2470914
Alignment:
| Q |
82 |
atgtgatgaagtcgagaggtgcctctttatcttatttattgcgtaactaccttagcctttgatagtgacttgtaagtgtttcatgtttttgcttcaaacc |
181 |
Q |
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| T |
2470779 |
atgtcatgaagttgagacgtgcctctttatcttatttattgcgtaattaccttagcctttgatagtgacttgtaagtgtttcatgtttttgctttaaacc |
2470878 |
T |
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| Q |
182 |
atccaattcaattttcactttttcaatctgtttctt |
217 |
Q |
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| T |
2470879 |
atccaattcaatttgcactttttcaatctgtttctt |
2470914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 2470926 - 2470981
Alignment:
| Q |
239 |
ttgaagataaattaaaattagttgactgaaagacttgcattagacatcctttacat |
294 |
Q |
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| T |
2470926 |
ttgaagataaattaaaattaactgactgaaagacattcataagacatcctttacat |
2470981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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