View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16980_low_10 (Length: 213)
Name: NF16980_low_10
Description: NF16980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16980_low_10 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28723410 - 28723604
Alignment:
| Q |
1 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28723410 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcagaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
28723509 |
T |
|
| Q |
101 |
aataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctcc |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28723510 |
aataggaataaatgcctccaaaacaatcacctttccatcattaggaatagcatcgtaacaattcttcaaaagctttaagcaattatcgtcgctcc |
28723604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28731052 - 28731246
Alignment:
| Q |
1 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731052 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcagaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
28731151 |
T |
|
| Q |
101 |
aataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctcc |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731152 |
aataggaataaatgcctccaaaacaatcacctttccatcattaggaatagcatcgtaacaattcttcaaaagctttaagcaattatcgtcgctcc |
28731246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28708051 - 28708245
Alignment:
| Q |
1 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
28708051 |
tgaattcttgcttatttctctcttttcctcctgggtattgagtcatcatcagaacatctaattgggaggtagacctcgaagcataaccattatcaggtat |
28708150 |
T |
|
| Q |
101 |
aataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaattatcgtcgctcc |
195 |
Q |
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|||||||| ||||| ||||| |||||| ||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
28708151 |
aataggaagaaatgtctccaaaacaataacctttccatcatcagtaatagcatcataacaattcttcaaaagctttaagcaattatcgtcgctcc |
28708245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 28623825 - 28623996
Alignment:
| Q |
12 |
ttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataataggaataa |
111 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||| ||||| | ||| |||||| |
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| T |
28623825 |
ttagttctctcttttcctcttgggcattgagtcatcatcataacatctaattgggcaatagactttgaagcataaccattctcaggcacaatgggaatat |
28623924 |
T |
|
| Q |
112 |
atgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaat |
183 |
Q |
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|||||| | |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
28623925 |
gtgcctctaaaacaatcacctttccatcattagggatagcatcataacaattcttcaaaagctttaagcaat |
28623996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 28628151 - 28628333
Alignment:
| Q |
1 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
100 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||| || ||||||||||| |||||| ||||| ||||||||| ||||||||||| ||| ||||| | |
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| T |
28628151 |
tgaactctttcttagttcgttcttttcctcctggattttgagtcatcatcagaacatccaattgagaggtagactttgaagcataaatattctcaggcac |
28628250 |
T |
|
| Q |
101 |
aataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaat |
183 |
Q |
| |
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||| |||||| |||||| | |||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||| |
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| T |
28628251 |
aatgggaatatgtgcctctaaaacaatcacctttccatcattagggatagcatcataacaattcttcaaaatctttaagcaat |
28628333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 28695470 - 28695648
Alignment:
| Q |
3 |
aattcttgcttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtataa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||| ||||||||| | |||||||||||||| ||| | | | |
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| T |
28695470 |
aattcttgcttagttctctcttttcctcctagggtttgagtcatcatcagaacatctaattgagaggtagacttcgaagcataatcattctcatgcacag |
28695569 |
T |
|
| Q |
103 |
taggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagca |
181 |
Q |
| |
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| ||||| |||||| | |||||||||||| ||||||||||| ||||| || |||||||||||||||| ||||||||| |
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| T |
28695570 |
tgggaatttgtgcctctaaaacaatcaccttcccatcattagggatagcatcataacaattcttcaaaatctttaagca |
28695648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 8846934 - 8846882
Alignment:
| Q |
117 |
tccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaa |
169 |
Q |
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|
|||| ||||||||| |||||||||||||||||||| | | |||||||||||| |
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| T |
8846934 |
tccacaacaatcacttttccatcattaggaatagctttatgacaattcttcaa |
8846882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 8476 - 8294
Alignment:
| Q |
1 |
tgaattcttgcttagttctctcttttcctcctgggttcatagtcatcatcaaaacatctaattgggaggtagaccttgaagcataatcattatcaggtat |
100 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | ||||||||||| |||||| ||||| ||||||||| ||||||||||| ||| ||||| | |
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| T |
8476 |
tgaactcttgcttagttcgttcttttcctcctggactttgagtcatcatcagaacatccaattgagaggtagactttgaagcataactattctcaggcac |
8377 |
T |
|
| Q |
101 |
aataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaat |
183 |
Q |
| |
|
||| |||||| |||||| | |||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||| |
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|
| T |
8376 |
aatgggaatatgtgcctctaaaacaatcacctttccatcattagggatagcatcataacaattcttcaaaatctttaagcaat |
8294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 49106477 - 49106562
Alignment:
| Q |
96 |
ggtataataggaataaatgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagca |
181 |
Q |
| |
|
|||||||| | || || |||||||| |||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| |
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| T |
49106477 |
ggtataatcgaaagaactgcctccaaaacaatcacctttccatcatcgggaatagcatcatagcagttcttcaaaagcttcaagca |
49106562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 49098036 - 49098096
Alignment:
| Q |
123 |
acaatcacctttccatcattaggaatagcgtcgtaacaattcttcaaaagctttaagcaat |
183 |
Q |
| |
|
||||| ||||||||||| | ||||||||| | ||||||||| ||||| ||||| ||||||| |
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| T |
49098036 |
acaataacctttccatcctcaggaatagctttgtaacaatttttcaacagcttcaagcaat |
49098096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 29648891 - 29648836
Alignment:
| Q |
113 |
tgcctccataacaatcacctttccatcattaggaatagcgtcgtaacaattcttca |
168 |
Q |
| |
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|||||||| ||| |||||||||||||||| ||||||||| || || |||||||||| |
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|
| T |
29648891 |
tgcctccaaaactatcacctttccatcatcaggaatagcatcatagcaattcttca |
29648836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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