View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16980_low_3 (Length: 334)
Name: NF16980_low_3
Description: NF16980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16980_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 54779138 - 54778843
Alignment:
| Q |
24 |
gtgtcagtgtttcatagctttctttcaactactagcagactgttttctaacaatttttagttatttagttgtgtgtggtatttcttttgggagagtgcat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54779138 |
gtgtcagtgtttcatagctttctttcaattactagcagactgttttctaacaatttttagttatttagttgtgtgtggtatttcttttgggagagtgcat |
54779039 |
T |
|
| Q |
124 |
gttattgaatctatatttttaataagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttctaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54779038 |
gttattgaatctatatttttaataagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttgtaa |
54778939 |
T |
|
| Q |
224 |
actgtgcacaatgcatgttatgcacttatgcagtttgtttcgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54778938 |
actgtgcacaatgcatgttatgcacttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgt |
54778843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 29 - 325
Target Start/End: Original strand, 54790012 - 54790308
Alignment:
| Q |
29 |
agtgtttcatagctttctttcaactactagcagactgttttctaacaatttttagttatttagttgtgtgtggtatttcttttgggagagtgcatgttat |
128 |
Q |
| |
|
||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || |
|
|
| T |
54790012 |
agtgtttcatagctttctttcaattatttgcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgtcat |
54790111 |
T |
|
| Q |
129 |
tgaatctatatttttaataagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttctaaactgt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54790112 |
tgaatctatatttttaataagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttgtaaactgt |
54790211 |
T |
|
| Q |
229 |
gcacaatgcatgttatgcacttatgcagtttgtttcgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgttcatct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54790212 |
gcacaatgcatgttatgcacttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgtccatct |
54790308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 52282656 - 52282964
Alignment:
| Q |
16 |
cagtgtttgtgtcagtgtttcatagctttctttcaactactagcagactgttttctaacaatttttagttatttagttgtgtgtggtatttcttttggga |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52282656 |
cagtgtttatgtcagtgtttcatagctttctttcaattagaagcagactgtattttaacaatttttagttatttagttgtgtgtggtttttcttttggga |
52282755 |
T |
|
| Q |
116 |
g---agtgcatgttattgaatctatatttttaataagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatt |
212 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52282756 |
ggagagtgcatgttactgaatctatatttttaataagtagcgcac---gatgtatctctgcttcatgcatggctgtagttttccttatatgttctgaatt |
52282852 |
T |
|
| Q |
213 |
tgtatttctaaactgtgcacaatgcatgttatgcacttatgc-----agtttgtttcgctttggggaatatcttattcttttttctaattgcatcatata |
307 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
52282853 |
tgtatttgtatattgtgcacaatgcatgttatgcacttatgcagtttagtttgttttgctctgggggatatcttattctttttcctaattgcatcatgta |
52282952 |
T |
|
| Q |
308 |
tatctctcatgt |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
52282953 |
tatctctcatgt |
52282964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 19296053 - 19296149
Alignment:
| Q |
29 |
agtgtttcatagctttctttcaactactagcagactgttttctaacaatttttagttatttagttgtgtgtggtatttcttttgggagagtgcatgt |
125 |
Q |
| |
|
||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
19296053 |
agtgtttcatagctttctttcaattatttgcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgt |
19296149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University