View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16980_low_9 (Length: 222)
Name: NF16980_low_9
Description: NF16980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16980_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 8436602 - 8436792
Alignment:
| Q |
17 |
ttctcttccccaaaatcatcttgatctcttcaatatcatcaatactctctccaaattcttcatcagtactagtaacattgtcttgttcatcatgaatggt |
116 |
Q |
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| T |
8436602 |
ttctcttccccaaaatcatcttgacctcttcaatatcatcaatactctctccaaattcttcatcagtactagtaacattgtcttgttcatcatgaatggt |
8436701 |
T |
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| Q |
117 |
tctagcattgattcgaacattcatgctttctgatgtgcaagttagttgtgtactcatgtgtcctattacatatgctaagttgtttattatt |
207 |
Q |
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| T |
8436702 |
tctagcattgattcgaacattcatgctttctgatgtgcaagttagttgtgtactcatgtgtcctattacatatgctaagttgtttattatt |
8436792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 8414262 - 8414407
Alignment:
| Q |
64 |
tctccaaattcttcatcagtactagtaacattgtcttgttca-----tcatgaatggttctagcattgattcgaacattcatgctttctgatgtgcaagt |
158 |
Q |
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| T |
8414262 |
tctccaaattcttcatcattactagtatcattgtcttgttcgattcgtcatgaatggtac---cattgattcgaacgttcatgctttttgatgtataagt |
8414358 |
T |
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| Q |
159 |
tagttgtgtactcatgtgtcctattacatatgctaagttgtttattatt |
207 |
Q |
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| T |
8414359 |
tagttgtgtactcatgtctcctattagacatgcgaagttgtttattatt |
8414407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 7875612 - 7875450
Alignment:
| Q |
42 |
ctcttcaatatcatcaatactctctccaaattcttcatcagtactagtaacattgtcttgttcatcatgaatggttctagcattgattcgaacattcatg |
141 |
Q |
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| T |
7875612 |
ctcttcaatatcatcaacactcactccaaattactcattattactttaaacattgtcttgttcgtgagaaatggtttgagcattggttcgaacgttcatg |
7875513 |
T |
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| Q |
142 |
ctttctgatgtgcaagttagttgtgtactcatgtgtcctattacatatgctaagttgtttatt |
204 |
Q |
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|||| || || |||| ||| ||||||||||| |||| ||||| | |||| ||||| |||||| |
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| T |
7875512 |
ctttatggtgcacaagctagatgtgtactcatatgtcatattagacatgcaaagttttttatt |
7875450 |
T |
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