View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16981_high_2 (Length: 308)
Name: NF16981_high_2
Description: NF16981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16981_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 37633168 - 37633437
Alignment:
| Q |
14 |
agaagacgtaagaatcacgtgcatgaagttataatatgctaccttttaacattattttattggtaaatgtttgatatacattcatatgtgtatacacttt |
113 |
Q |
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| T |
37633168 |
agaagacgtaagaatcacgtgcatgaagttatattacgctaccttttaacattattttattggtaaatgtttgatatacattcatatgtgtatacacttt |
37633267 |
T |
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| Q |
114 |
aaagaaaaatagataaaagaaaatattagaggttaataacgtgataatttgttgtattttatttcatgcattattatcatcattatagttagtttgttac |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37633268 |
aaagaaaaatagataaaagaaaatattataggttaataacgtgataatttgttgtattttatttcatgcatt---------attatagttagtttgttac |
37633358 |
T |
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| Q |
214 |
taagttttatgatttcctatcctatacatgaagtaggcttcttcta---tgttgtcaaatgacatatttcacgtgccctttctg |
294 |
Q |
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| T |
37633359 |
tatgttttatgatt-----tcctatacatgaagtaggcttcttctatgttgttgtcaaatgacacatttcacgtgccctttctg |
37633437 |
T |
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