View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16981_high_5 (Length: 215)
Name: NF16981_high_5
Description: NF16981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16981_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 7954816 - 7954635
Alignment:
| Q |
17 |
aaatgatatctgatgtgaggatccatttagcctgacaacagaaggttaacnnnnnnnnng-tgttatatccgcgaaagttagactccaaatctgcaacgt |
115 |
Q |
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| T |
7954816 |
aaatgatatctgatgtgaggatccatttagcctgacaacagaaggttaacaaaaaaaaaaatgttatatccgcgaaagttagattccaaatctgcaacgt |
7954717 |
T |
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| Q |
116 |
tgacgtcaaccaaagtcattgaatgaatccgcatggattgaagttgatgtgacaaattgaatcgaacaaacacctgaacaaa |
197 |
Q |
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| T |
7954716 |
tgacgtcaaccaaagttattgaatgaatccgcatggattgaagttgatctgacaaattgaatcgaacaaacacctgaacaaa |
7954635 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 34039448 - 34039519
Alignment:
| Q |
126 |
caaagtcattgaatgaatccgca-tggattgaagttgatgtgacaaattgaatcgaacaaacacctgaacaa |
196 |
Q |
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| T |
34039448 |
caaattcattgattgaatccgcactagattgaagttgatatgacaatttgaaccaaacaaacacctgaacaa |
34039519 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 17325560 - 17325606
Alignment:
| Q |
150 |
ggattgaagttgatgtgacaaattgaatcgaacaaacacctgaacaa |
196 |
Q |
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| T |
17325560 |
ggattgaagttgatctgacaatctgaatcgaacaaacacctgaacaa |
17325606 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 3397851 - 3397923
Alignment:
| Q |
125 |
ccaaagtcattgaatgaatccgca-tggattgaagttgatgtgacaaattgaatcgaacaaacacctgaacaa |
196 |
Q |
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| T |
3397851 |
ccaaagtcattggttgaatctgcactggatcgaagatgatctgacaatctgaattgaacaaacacctgaacaa |
3397923 |
T |
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