View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16981_low_3 (Length: 551)
Name: NF16981_low_3
Description: NF16981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16981_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 23 - 534
Target Start/End: Original strand, 2467521 - 2468028
Alignment:
| Q |
23 |
aaggatgagtgttat-ttaatttaggagggaaagagataacaaagcaaggtgaggtggttggttaatgtgacgcgggacttatccaagaaattggaaaaa |
121 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467521 |
aaggatgagtgttatgttaatttaggagggaaagagataacaaagcaaggtgaggtggttggttaatgtgacgcgggacttatccaagaaattggaaaaa |
2467620 |
T |
|
| Q |
122 |
gaaaaacagagagcgagctgcgaagcatagcatagcagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctcc |
221 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467621 |
taaaaacagagagcgagctgcgaagca-----tagcagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctcc |
2467715 |
T |
|
| Q |
222 |
attcgtttccaaaaccatttaagagccagcacttttcatctttcaccacctcacttatatcctcttccattttcccccctcctactcctcgctgcaatct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2467716 |
attcgtttccaaaaccatttaagagccagcactttttatctttcaccacctcacttatatcctcttccatttttccccctcctactcctcgctgcaatct |
2467815 |
T |
|
| Q |
322 |
caaattaccaccacgctttcaattcaccaacatttttcgggctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467816 |
caaattaccaccacgctttcaattcaccaacatttttcggtctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctca |
2467915 |
T |
|
| Q |
422 |
aatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgt |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467916 |
aatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgt |
2468015 |
T |
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| Q |
522 |
gtcttctgatgat |
534 |
Q |
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||||||||||||| |
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| T |
2468016 |
gtcttctgatgat |
2468028 |
T |
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