View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16981_low_4 (Length: 425)
Name: NF16981_low_4
Description: NF16981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16981_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 4783421 - 4783109
Alignment:
| Q |
17 |
aataaaaatactagtatgtatataatttggagttctatactttaataaagctatgactttaaatgtcactttaatggaatgcacgtgaatgtaaaaaatg |
116 |
Q |
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| T |
4783421 |
aataaaaatactagtatgtatataatttggagttctatactttaataaagctatgactttaaatgtgactttaatggaatgcacgtgaatgtaaaaaatg |
4783322 |
T |
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| Q |
117 |
acattgccaacttcttcctacccttaaccctataaattaaaaaattgcttcttcaaaaaggattggggctctaagaagtcatatgatacatctagactcc |
216 |
Q |
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| T |
4783321 |
acattgccaacttcttcctacccttaaccctataaattacaaacttgcttcttcaaaaaggattggggctctaagaagtcatatgatacatctagactcc |
4783222 |
T |
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| Q |
217 |
ccagtgtcccacaaaaatatcatttccttataacatatattttatggcagcttggtctttcaaacattgattgatttagaaatgtttcctatagtgcatg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783221 |
ccagtgtcccacagaaatatcatttccttataacatatattttatggcagcttggtctttcaaacattgattgatttagaaatgtttcctatagtgcatg |
4783122 |
T |
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| Q |
317 |
ttggaagtggcaa |
329 |
Q |
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||||||||||||| |
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| T |
4783121 |
ttggaagtggcaa |
4783109 |
T |
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