View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16982_low_1 (Length: 565)
Name: NF16982_low_1
Description: NF16982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16982_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 548
Target Start/End: Original strand, 46439056 - 46439591
Alignment:
| Q |
15 |
catagggactactaaactgaacaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttccc |
114 |
Q |
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| T |
46439056 |
catagggactactaaactgaagaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttccc |
46439155 |
T |
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| Q |
115 |
gttgaggaaattgctggggagcgagaatatgatagtatatcacaatatctttggaagtttgcaactacgccgccaaagtaattgcatagatagaactgtg |
214 |
Q |
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| T |
46439156 |
gttgaggaaattgctggggagcgagaatatgatagtatatcacaatatctttggaagtttgcaactacgccgccaaagtaattgcatagatagaactgtg |
46439255 |
T |
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| Q |
215 |
caattgtaatgaattgagtgctgtgtttgtatttcactatgatgcttacctcaatgatataacttctc---------------------tacatgggaga |
293 |
Q |
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| T |
46439256 |
caactgtaatgaattgagtgttgtgtttgtatttcactatgatgtttacctcaatgaaataacttctctacaagataatgacaatatgttacatgggaga |
46439355 |
T |
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| Q |
294 |
attgttatttcaagcctatcttcttggattttcattagtaaatgacaaagcagttatgaattacggccttttatttggaaagttgcagttgaaaatgata |
393 |
Q |
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| T |
46439356 |
attgttatttcaagcctatcttcttggattttcattagtaaacgacaaagcagttatgaattacggccttttat--------------ttgaaaatgata |
46439441 |
T |
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| Q |
394 |
ctgtcaccatcattttactggcaaaataatcagttattatttgcatttatttctcaacttag--gcttaataaaaaattagcgatattgtaaattaattg |
491 |
Q |
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| T |
46439442 |
ctgtcaccatcattttactggcaaaataatcaattattatttgcatttatttctcaacttaggcgcttaataaaaaattagcga---tgtaaattaattg |
46439538 |
T |
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| Q |
492 |
aaaagcttaggcattgagaattaagcatgctagctgaaatgggaatatgatggaaat |
548 |
Q |
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| T |
46439539 |
aaaagcttaggcattgagaattaagcat----gctgaaatgggaatatgatggaaat |
46439591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 46433437 - 46433637
Alignment:
| Q |
18 |
agggactactaaactgaacaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttcccgtt |
117 |
Q |
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| T |
46433437 |
agggactactaaagtgaagaactttgaaaacaacattggatctctgattgtaaagcttacagaagaagatttgaaggaaatttctgatgctgttcctgtt |
46433536 |
T |
|
| Q |
118 |
gaggaaattgctggggagcgagaatatgatagtatatcacaatatctttggaagtttgcaactacgccgccaaagt-aattgcatagatagaactgtgca |
216 |
Q |
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| T |
46433537 |
gcggaaatcgctgggaatctagaaaatcacagtttgtcgcaatatagttggaagtttgcaactacaccgccaaagtaaattgcatagagagaactgtgca |
46433636 |
T |
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| Q |
217 |
a |
217 |
Q |
| |
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| T |
46433637 |
a |
46433637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 46450066 - 46450256
Alignment:
| Q |
22 |
actactaaactgaacaactttgaaaacaacattggatctctgaatgtgaagcttacacaagaaaatttgaaggaaatttctgatgcagttcccgttgagg |
121 |
Q |
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||||||||| |||| ||||| ||||||| |||||||||||||| | | ||||||||| ||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
46450066 |
actactaaagtgaagaactt-gaaaacagcattggatctctgatt-taaagcttacagaagaagatttgaaagaaatttctgatgcagttcctattgagg |
46450163 |
T |
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| Q |
122 |
aaattgctggggagcgagaatatgatagtatatcacaatatctt-----tggaagtttgcaactacgccgccaaagtaattgcatagatagaa |
209 |
Q |
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| T |
46450164 |
aaatcgctgggaatctagaaaatcacagtttatcacaatatagttggaatggaagtttgcaactatgccgacaaagttattgcatagagagaa |
46450256 |
T |
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