View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16983_high_1 (Length: 727)

Name: NF16983_high_1
Description: NF16983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16983_high_1
NF16983_high_1
[»] chr6 (57 HSPs)
chr6 (10-709)||(5255963-5256662)
chr6 (365-709)||(5283088-5283417)
chr6 (454-697)||(5180635-5180878)
chr6 (445-697)||(5448791-5449043)
chr6 (446-688)||(5439194-5439436)
chr6 (14-133)||(5283603-5283722)
chr6 (174-307)||(5283427-5283560)
chr6 (174-305)||(5101035-5101166)
chr6 (174-305)||(5136136-5136267)
chr6 (174-307)||(5426847-5426980)
chr6 (452-702)||(5398235-5398473)
chr6 (184-302)||(5438968-5439086)
chr6 (185-305)||(5156230-5156350)
chr6 (178-305)||(5448560-5448687)
chr6 (622-697)||(5100721-5100796)
chr6 (174-307)||(5351347-5351480)
chr6 (187-302)||(5398006-5398121)
chr6 (622-694)||(5135825-5135897)
chr6 (186-302)||(5372056-5372172)
chr6 (185-305)||(5334137-5334257)
chr6 (185-302)||(5180994-5181111)
chr6 (194-305)||(5098178-5098289)
chr6 (181-304)||(5353081-5353204)
chr6 (454-564)||(5098402-5098512)
chr6 (452-546)||(5372286-5372380)
chr6 (446-559)||(5351583-5351696)
chr6 (455-535)||(5334377-5334457)
chr6 (452-546)||(5156025-5156119)
chr6 (464-546)||(5346230-5346312)
chr6 (622-688)||(5351717-5351783)
chr6 (206-295)||(2938888-2938977)
chr6 (174-263)||(5242774-5242863)
chr6 (567-702)||(5242336-5242469)
chr6 (452-559)||(2939104-2939211)
chr6 (628-702)||(5334453-5334528)
chr6 (456-546)||(5100830-5100920)
chr6 (456-546)||(5135931-5136021)
chr6 (622-688)||(5352700-5352766)
chr6 (174-263)||(5345973-5346062)
chr6 (446-558)||(5352863-5352975)
chr6 (468-559)||(5242511-5242602)
chr6 (174-245)||(5126909-5126980)
chr6 (79-129)||(5156409-5156459)
chr6 (12-82)||(5371900-5371970)
chr6 (446-539)||(5126648-5126741)
chr6 (454-559)||(5177930-5178035)
chr6 (454-559)||(5279755-5279860)
chr6 (454-559)||(5688902-5689007)
chr6 (376-407)||(5100972-5101003)
chr6 (77-127)||(5098058-5098108)
chr6 (25-94)||(5101231-5101301)
chr6 (25-94)||(5136332-5136402)
chr6 (561-695)||(5155843-5155977)
chr6 (377-407)||(5242666-5242696)
chr6 (377-419)||(5334289-5334331)
chr6 (377-407)||(5351511-5351541)
chr6 (219-305)||(23127527-23127613)
[»] chr3 (12 HSPs)
chr3 (174-322)||(47985593-47985741)
chr3 (174-322)||(47994880-47995028)
chr3 (174-322)||(48004167-48004315)
chr3 (174-322)||(48013452-48013600)
chr3 (576-695)||(47985223-47985342)
chr3 (576-695)||(47994510-47994629)
chr3 (576-695)||(48003797-48003916)
chr3 (576-695)||(48013082-48013201)
chr3 (446-546)||(47985405-47985505)
chr3 (446-546)||(48003979-48004079)
chr3 (446-546)||(47994692-47994792)
chr3 (446-546)||(48013264-48013364)
[»] chr5 (1 HSPs)
chr5 (184-305)||(8879486-8879607)
[»] chr2 (2 HSPs)
chr2 (174-305)||(22583504-22583638)
chr2 (661-702)||(22583239-22583280)
[»] chr4 (5 HSPs)
chr4 (220-301)||(4319523-4319604)
chr4 (221-322)||(4336896-4336997)
chr4 (221-322)||(4346350-4346451)
chr4 (221-322)||(4362546-4362647)
chr4 (237-294)||(4122872-4122929)
[»] chr7 (1 HSPs)
chr7 (446-546)||(36212933-36213033)
[»] scaffold0294 (1 HSPs)
scaffold0294 (376-407)||(8031-8062)


Alignment Details
Target: chr6 (Bit Score: 644; Significance: 0; HSPs: 57)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 10 - 709
Target Start/End: Complemental strand, 5256662 - 5255963
Alignment:
Q  10 aagaaaatctttatttgtaacgccaaaatatgattaaccaccttataagggaagttatatattcaattgttgaataaatgataaggtgatatttatatac 109  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5256662 aagaaaatctttatttgtaacgccaaaatatgattaactaccttataagggaagttatatattcaattgttcaataaatgataaggtgatatttatatac 5256563  T
Q  110 ttgtcaataaaattttgagcatacaggttgaagtctctaggaatttggttgaagtcaactggaatttgcttcctggtgatagtcatccaaattggttaac 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256562 ttgtcaataaaattttgagcatacaggttgaagtctcttggaatttggttgaagtcaactggaatttgcttcctggtgatagtcatccaaattggttaac 5256463  T
Q  210 ctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaacccctgat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256462 ctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaacccctgat 5256363  T
Q  310 gccattacatcaggtccctatagaaacttccatactgagataatgacagtaaatggctttagtaacgtgttagtgaaaaattacacaaaggccaccatcc 409  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256362 gccattacatcaggtccctatagaaacttcgatactgagataatgacagtatatggctttagtaacgtgttagtgaaaaattacacaaaggccaccatcc 5256263  T
Q  410 aattctataattgccgtacattttacttatttaaaaaggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgtttt 509  Q
    || |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5256262 aactctataattgtcaaacattttacttatttaaaaaggagtggcagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgtttt 5256163  T
Q  510 caagaatgatttcattgtgaagaagacagcaatttatttggtacatgatgcacaagatttgaatcacattgcttgtagcagtgatgaaagtgaatgctct 609  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||    
T  5256162 caagaatgatttcattgtgaagaagacagcaatttatttggtatatgatgcacaaaatttgaatcacattgcttgtagccgtgatgaaagtgaatggtct 5256063  T
Q  610 gaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaaaatggcacgaca 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256062 gaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaaaatggcacgaca 5255963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 365 - 709
Target Start/End: Complemental strand, 5283417 - 5283088
Alignment:
Q  365 gctttagtaacgtgttagtgaaaaattacacaaaggccaccatccaattctataattgccgtacattttacttatttaaaaaggagtggcagagggtaat 464  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |   | |||||| ||  ||| |||| |||||||||||||||||    
T  5283417 gctttagaaacgtgttagtgaaaaattacacaaaggccaccatccaactctataatagtgatgcattttcctactttgaaaatgagtggcagagggtaat 5283318  T
Q  465 atcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtacatgatgcacaa 564  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  | ||   |||||||||||||||||||||||||||| ||||| |||||||||||    
T  5283317 atcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgatgcacaa 5283218  T
Q  565 gatttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaa 664  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||               |||||     | ||| |||| |||| |||||||||||    
T  5283217 gatttgaatctcattgcttgtagaagtgatgaaagtgaatgctccgaa---------------gaagaacccactacttatgacttcactcagaacagaa 5283133  T
Q  665 agaagaaaaaccgagtggaatgaatcaatgaaaaatggcacgaca 709  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  5283132 agaagaaaaaccgagtggaatgaatcaatgaaaaatggcaagaca 5283088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 454 - 697
Target Start/End: Complemental strand, 5180878 - 5180635
Alignment:
Q  454 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtac 553  Q
    ||||||||| ||||||| || ||||| |||||||||||||||||||| ||||||||  ||||   |||||||||||||||||||||||||||| |||||     
T  5180878 cagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtat 5180779  T
Q  554 atgatgcacaagatttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaa 653  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||   |||| || ||| ||||||| || | | | || || |||||    
T  5180778 atgatgcacaagatttgaatctcattgcttgtagaggtgatgaaactgaatgctctgtgaagagattctctgctgaagacgaacacgccgacgacttcaa 5180679  T
Q  654 tcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5180678 tcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 445 - 697
Target Start/End: Original strand, 5448791 - 5449043
Alignment:
Q  445 aaggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattt 544  Q
    |||||| |||||||| || |||||||||| ||||| || |||||||||||| |||| ||||||||| |||||||||||| |||| ||||||||| | | |    
T  5448791 aaggaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtat 5448890  T
Q  545 atttggtacatgatgcacaagatttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactga 644  Q
    || ||||| |||||||||||||||| ||   ||||||||||||  ||||||||| ||||||||||  | |||  || ||||||||||| || ||| | ||    
T  5448891 atctggtatatgatgcacaagattttaacgtcattgcttgtagaggtgatgaaaatgaatgctctctaaagaacttctctactgaagacgatcccgcaga 5448990  T
Q  645 tgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 697  Q
    ||| |||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  5448991 tgacttcaatcagaacagaaagaagaaaaatcaagtagaatgaatcaatgaaa 5449043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 446 - 688
Target Start/End: Original strand, 5439194 - 5439436
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| |||||||| ||| ||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||  || |||||||||  |||    
T  5439194 aggaggggcagaggttaaaatcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagctta 5439293  T
Q  546 tttggtacatgatgcacaagatttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgat 645  Q
    | | ||| ||||||||||| ||||||||  | ||||| ||||  ||||||||| |||| || |||   |||| || ||||||| ||||||||||||||||    
T  5439294 tctcgtatatgatgcacaaaatttgaatgccgttgctagtagatgtgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgat 5439393  T
Q  646 gatttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 688  Q
    || ||||||| |||||||||||||||||| ||| |||||||||    
T  5439394 gacttcaatcggaacagaaagaagaaaaatcgaatggaatgaa 5439436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 5283722 - 5283603
Alignment:
Q  14 aaatctttatttgtaacgccaaaatatgattaaccaccttataagggaagttatatattcaattgttgaataaatgataaggtgatatttatatacttgt 113  Q
    |||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  5283722 aaatatttatttgtaacatcaaaatatgattaactaccttataagggaagttatatcttcaattgttgaataaatgataaagtgatatttatatacttgt 5283623  T
Q  114 caataaaattttgagcatac 133  Q
    ||||||||||||||||||||    
T  5283622 caataaaattttgagcatac 5283603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 5283560 - 5283427
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    ||||||||||||||||||| ||||| ||||||| |||| |||||| ||||||||||||||||||||||| |||||  ||||||||||| ||||||||| |    
T  5283560 tttgcttcctggtgatagttatccagattggttgacctttagttcagaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaag 5283461  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctg 307  Q
    ||||||||||||||||||||||||||||||||||    
T  5283460 tcaatgatgtgcattgtctatacttcaacccctg 5283427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 5101166 - 5101035
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||| |||||||||||||||||||| ||||||||  |||| |||||||||||||||| |    
T  5101166 tttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaag 5101067  T
Q  274 tcaatgatgtgcattgtctatacttcaacccc 305  Q
     |||||||||||||||||||||||||||||||    
T  5101066 acaatgatgtgcattgtctatacttcaacccc 5101035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 5136267 - 5136136
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||| |||||||||||||||||||| ||||||||  |||| |||||||||||||||| |    
T  5136267 tttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaag 5136168  T
Q  274 tcaatgatgtgcattgtctatacttcaacccc 305  Q
     |||||||||||||||||||||||||||||||    
T  5136167 acaatgatgtgcattgtctatacttcaacccc 5136136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 5426847 - 5426980
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||  |||| |||||||||||| ||| |    
T  5426847 tttgcttcctggtgacagttatccaaagtggttaacctatagttctgaaggttcttctgtaacttttcaagttccacaagtggaagggcgtaacctgaag 5426946  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctg 307  Q
     |||| |||||||| |||||||||||||||||||    
T  5426947 acaattatgtgcatagtctatacttcaacccctg 5426980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 452 - 702
Target Start/End: Original strand, 5398235 - 5398473
Alignment:
Q  452 ggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggt 551  Q
    |||| |||||| |||||||||| ||||| ||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||| || ||||| | ||    
T  5398235 ggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgt 5398334  T
Q  552 acatgatgcacaagatttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttc 651  Q
    | |||||         ||||||   ||||||||||    |||||||| |||| || |||   |||| || ||||||||||| |||||||||||||| |||    
T  5398335 atatgat---------ttgaatgcaattgcttgtaa---tgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttc 5398422  T
Q  652 aatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaaaatgg 702  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||| ||||    
T  5398423 aatcagaaaagaaagaagaaaagccgagttgaatgaatcaatgaaagatgg 5398473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 5438968 - 5439086
Alignment:
Q  184 ggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgt 283  Q
    ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||||  |||| ||||||||||| ||||||||| ||||||    
T  5438968 ggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtcattgatgt 5439067  T
Q  284 gcattgtctatacttcaac 302  Q
    ||||||||||| |||||||    
T  5439068 gcattgtctattcttcaac 5439086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 5156350 - 5156230
Alignment:
Q  185 gtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtg 284  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |  |||||||| ||  |||| |||||||||||||||| | ||||||||||    
T  5156350 gtgatagttatccaaattggttaacctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtg 5156251  T
Q  285 cattgtctatacttcaacccc 305  Q
    |||||||||||||||||||||    
T  5156250 cattgtctatacttcaacccc 5156230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 5448560 - 5448687
Alignment:
Q  178 cttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaa 277  Q
    ||||| ||||||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||||||  |||| |||| |||| | |||| ||||     
T  5448560 cttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtcat 5448659  T
Q  278 tgatgtgcattgtctatacttcaacccc 305  Q
    ||||||||||||||||||||||||||||    
T  5448660 tgatgtgcattgtctatacttcaacccc 5448687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 622 - 697
Target Start/End: Complemental strand, 5100796 - 5100721
Alignment:
Q  622 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 697  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100796 tctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5100721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 5351347 - 5351480
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    ||||||||||||||||||| |||||||||||||||||| || ||| |||| ||||||||| |  |||||||| ||  |||| ||||||||| |||||| |    
T  5351347 tttgcttcctggtgatagttatccaaattggttaacctttatttcagaagtttcttctgtgaaatttgaagttcctcaagtggaagggcgtgacttgaag 5351446  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctg 307  Q
     ||||||||||||| |||||||||||||||||||    
T  5351447 acaatgatgtgcatagtctatacttcaacccctg 5351480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 5398006 - 5398121
Alignment:
Q  187 gatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgca 286  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||  | || |||||||||||||||| | ||||||||||||    
T  5398006 gatagttatccaaattggttaacttatagttctgagggttcttctttaacttttgaagttcctcatgtggaagggcgtaacttgaagacaatgatgtgca 5398105  T
Q  287 ttgtctatacttcaac 302  Q
    |||| |||||||||||    
T  5398106 ttgtgtatacttcaac 5398121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 622 - 694
Target Start/End: Complemental strand, 5135897 - 5135825
Alignment:
Q  622 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatg 694  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5135897 tctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatg 5135825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 5372056 - 5372172
Alignment:
Q  186 tgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgc 285  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |  |||||||| ||  |||| |||||||||||||||| | |||| ||||||    
T  5372056 tgatagttatccaaattggttaacctatagttctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatgtgc 5372155  T
Q  286 attgtctatacttcaac 302  Q
    | ||||| |||||||||    
T  5372156 aatgtctgtacttcaac 5372172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 5334137 - 5334257
Alignment:
Q  185 gtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtg 284  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||||||| |  |||||||| ||  |||| |||||| ||||||||| | ||||||||||    
T  5334137 gtgatagttatccaaattggttaagctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggggtaacttgaagacaatgatgtg 5334236  T
Q  285 cattgtctatacttcaacccc 305  Q
    |||| |||||| |||||||||    
T  5334237 cattttctataattcaacccc 5334257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 5181111 - 5180994
Alignment:
Q  185 gtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtg 284  Q
    |||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||    || ||||| |||||||||| | ||||||||      
T  5181111 gtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctttggtggaaggacgtaacttgaagacaatgatgct 5181012  T
Q  285 cattgtctatacttcaac 302  Q
    | ||||||||| ||||||    
T  5181011 cgttgtctataattcaac 5180994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 5098178 - 5098289
Alignment:
Q  194 atccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtcta 293  Q
    ||||| |||||||||||| |  ||||||||||||||| ||||||||| |||| ||| |||| ||||| |||| |||||   |||||||||||||||||||    
T  5098178 atccagattggttaacctttcattctgaaggttcttcggtaacttttcaagttccccaagtggaaggccgtagcttgaaaacaatgatgtgcattgtcta 5098277  T
Q  294 tacttcaacccc 305  Q
    ||||||||||||    
T  5098278 tacttcaacccc 5098289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 181 - 304
Target Start/End: Complemental strand, 5353204 - 5353081
Alignment:
Q  181 cctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatga 280  Q
    |||||||||||| ||||||||||||||||||     |||||||||||||||||||||||| | |||||    || |||||||||||||||| | ||||||    
T  5353204 cctggtgatagttatccaaattggttaaccttctactctgaaggttcttctgtaacttttcatgtccctctggtggaagggcgtaacttgaagacaatga 5353105  T
Q  281 tgtgcattgtctatacttcaaccc 304  Q
    |||||||| ||||||| |||||||    
T  5353104 tgtgcattatctatacgtcaaccc 5353081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 564
Target Start/End: Original strand, 5098402 - 5098512
Alignment:
Q  454 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtac 553  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |  |||||||| ||||   |||||||||||| ||||||||| ||||| |||||     
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  554 atgatgcacaa 564  Q
    |||||| ||||    
T  5098502 atgatgaacaa 5098512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 452 - 546
Target Start/End: Original strand, 5372286 - 5372380
Alignment:
Q  452 ggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttat 546  Q
    ||||||||||| |||||||| | ||||| ||||||||||||||| ||   |||||| || |||||||||||||||||||||||||| ||||||||    
T  5372286 ggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttat 5372380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 446 - 559
Target Start/End: Original strand, 5351583 - 5351696
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| |||||||| || |||||||||| |||||  ||||||||||||||||| | ||||||||| ||||||||| ||||||||| ||||||| | ||||    
T  5351583 aggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagttta 5351682  T
Q  546 tttggtacatgatg 559  Q
    | | ||| ||||||    
T  5351683 tctcgtatatgatg 5351696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 535
Target Start/End: Original strand, 5334377 - 5334457
Alignment:
Q  455 agagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaaga 535  Q
    |||||||| ||||| || | ||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  5334377 agagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaaga 5334457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 546
Target Start/End: Complemental strand, 5156119 - 5156025
Alignment:
Q  452 ggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttat 546  Q
    ||||||||||| |||||||| | ||||| ||||||||||||||||||   ||||||||| ||| | |||||||||||||||||||| || |||||    
T  5156119 ggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttat 5156025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 5346230 - 5346312
Alignment:
Q  464 tatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttat 546  Q
    |||||||||| ||||| ||||||||||||||||| ||  ||||| |  |||||| ||||||||||||||||||||||||||||    
T  5346230 tatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttat 5346312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 622 - 688
Target Start/End: Original strand, 5351717 - 5351783
Alignment:
Q  622 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 688  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||||||| ||||    
T  5351717 tctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtggattgaa 5351783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 2938888 - 2938977
Alignment:
Q  206 taacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctata 295  Q
    ||||||||| ||||||| |||||||||| |  |||||||| ||  |||| |||||||||||||||| | |||||||||||||||||||||    
T  2938888 taacctataattctgaatgttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctata 2938977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 5242863 - 5242774
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcg 263  Q
    ||||||||||||||| ||| ||||| ||||||||||||    |||||||||||||||||| ||||||||||||||  |||| ||||||||    
T  5242863 tttgcttcctggtgacagttatccagattggttaaccttcgattctgaaggttcttctgttacttttgaagtccctcaagtggaagggcg 5242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 702
Target Start/End: Complemental strand, 5242469 - 5242336
Alignment:
Q  567 tttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaag 666  Q
    ||||||| ||||| ||| |||  ||||||||  |||| ||||||   |||| || |||||||||||||||||  ||||||| |||||||||||| |||      
T  5242469 tttgaatgacattacttatagaggtgatgaagatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa-- 5242372  T
Q  667 aagaaaaaccgagtggaatgaatcaatgaaaaatgg 702  Q
    |||||||| ||||||||||| |||||||||| ||||    
T  5242371 aagaaaaatcgagtggaatgtatcaatgaaagatgg 5242336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 2939104 - 2939211
Alignment:
Q  452 ggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggt 551  Q
    ||||||||||| |||||||| |  |||| ||||||||||||||||||   |||||| || ||||||||| ||||||||||||| || |||||||| | ||    
T  2939104 ggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgt 2939203  T
Q  552 acatgatg 559  Q
    | ||||||    
T  2939204 atatgatg 2939211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 702
Target Start/End: Original strand, 5334453 - 5334528
Alignment:
Q  628 gaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaacc-gagtggaatgaatcaatgaaaaatgg 702  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||| || |||||||||||||| |||||| ||||    
T  5334453 gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaagcctgagtggaatgaatctatgaaagatgg 5334528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 456 - 546
Target Start/End: Complemental strand, 5100920 - 5100830
Alignment:
Q  456 gagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttat 546  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||  |||||||  ||||   |||||||||||| ||||||||| |||||    
T  5100920 gagggtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttat 5100830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 456 - 546
Target Start/End: Complemental strand, 5136021 - 5135931
Alignment:
Q  456 gagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttat 546  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||  |||||||  ||||   |||||||||||| ||||||||| |||||    
T  5136021 gagggtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttat 5135931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 622 - 688
Target Start/End: Complemental strand, 5352766 - 5352700
Alignment:
Q  622 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 688  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||||||||| ||| |||||||||    
T  5352766 tctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 5352700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 5345973 - 5346062
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcg 263  Q
    ||||||||||||||| ||| ||||| |||||||||| |  | |||||||||||||||||| ||||||||||| ||  |||| ||||||||    
T  5345973 tttgcttcctggtgacagttatccagattggttaactttcaattctgaaggttcttctgttacttttgaagttcctcaagtggaagggcg 5346062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 446 - 558
Target Start/End: Complemental strand, 5352975 - 5352863
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| ||||||| ||| |||||||||| || || ||| ||||||| ||||| ||  |||||||| |||||  |||||| |||||||||||| |||||||    
T  5352975 aggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaattta 5352876  T
Q  546 tttggtacatgat 558  Q
    | ||||| |||||    
T  5352875 tctggtatatgat 5352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 559
Target Start/End: Complemental strand, 5242602 - 5242511
Alignment:
Q  468 aagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtacatgatg 559  Q
    |||||| ||||| |||||||||||||||||||| ||||||||  ||||   |||||||||||||||||||| | ||||| | ||| ||||||    
T  5242602 aagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatg 5242511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 5126980 - 5126909
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagt 245  Q
    ||||||||||||||||||| ||||| |||||||| |||  |  || ||||||||||| ||||||||||||||    
T  5126980 tttgcttcctggtgatagttatccatattggttagccttcaactccgaaggttcttcggtaacttttgaagt 5126909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 5156459 - 5156409
Alignment:
Q  79 ttgaataaatgataaggtgatatttatatacttgtcaataaaattttgagc 129  Q
    |||||||||||||||||||||||| ||||||||  |||| |||||||||||    
T  5156459 ttgaataaatgataaggtgatattaatatactttacaattaaattttgagc 5156409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 5371900 - 5371970
Alignment:
Q  12 gaaaatctttatttgtaacgccaaaatatgattaaccaccttataagggaagttatatattcaattgttga 82  Q
    |||||| ||||||||||||  ||||||||||||||  ||||||||||| || |||||| || |||||||||    
T  5371900 gaaaatatttatttgtaacaacaaaatatgattaattaccttataaggaaaattatatcttaaattgttga 5371970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 539
Target Start/End: Complemental strand, 5126741 - 5126648
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagc 539  Q
    ||||| || |||| ||| |||||||||| ||| | ||||||||||| ||| | ||  ||||||| ||||| | |||||||||||||||||||||    
T  5126741 aggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagc 5126648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 5177930 - 5178035
Alignment:
Q  454 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtac 553  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| ||  |||||||  |||| | ||||||||||||||| ||| || ||||| | |||     
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  554 atgatg 559  Q
    ||||||    
T  5178030 atgatg 5178035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 559
Target Start/End: Original strand, 5279755 - 5279860
Alignment:
Q  454 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtac 553  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| ||  |||||||  |||| | ||||||||||||||| ||| || ||||| | |||     
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  554 atgatg 559  Q
    ||||||    
T  5279855 atgatg 5279860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 5689007 - 5688902
Alignment:
Q  454 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtac 553  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  |||| | ||||||||||||||| ||| || ||||| | |||     
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  554 atgatg 559  Q
    ||||||    
T  5688907 atgatg 5688902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 5101003 - 5100972
Alignment:
Q  376 gtgttagtgaaaaattacacaaaggccaccat 407  Q
    ||||||||||||||||||||||||||||||||    
T  5101003 gtgttagtgaaaaattacacaaaggccaccat 5100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 5098058 - 5098108
Alignment:
Q  77 tgttgaataaatgataaggtgatatttatatacttgtcaataaaattttga 127  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||||| |||||    
T  5098058 tgttgaataaatgataaggtgttattattatacttgtcagtaaaactttga 5098108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5101301 - 5101231
Alignment:
Q  25 tgtaacgccaaaatatgattaaccaccttataagggaa-gttatatattcaattgttgaataaatgataag 94  Q
    ||||||| ||||||||||||||  ||||||| ||| || |||| || || |||||||||||||||||||||    
T  5101301 tgtaacgtcaaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaataaatgataag 5101231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5136402 - 5136332
Alignment:
Q  25 tgtaacgccaaaatatgattaaccaccttataagggaa-gttatatattcaattgttgaataaatgataag 94  Q
    ||||||| ||||||||||||||  ||||||| ||| || |||| || || |||||||||||||||||||||    
T  5136402 tgtaacgtcaaaatatgattaattaccttatgaggaaaagttaaatctttaattgttgaataaatgataag 5136332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 695
Target Start/End: Complemental strand, 5155977 - 5155843
Alignment:
Q  561 acaagatttgaatcacattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaac 660  Q
    |||||||||||||   ||| ||||||| | |||||||| ||||  |||||   |||| ||  || |||||| ||| |||| |||||| | |||||| |||    
T  5155977 acaagatttgaatgcaatttcttgtagtaatgatgaaaatgaactctctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaac 5155878  T
Q  661 agaaagaagaaaaaccgagtggaatgaatcaatga 695  Q
    ||||||||||||  ||  |||||||||||||||||    
T  5155877 agaaagaagaaaggccaggtggaatgaatcaatga 5155843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 5242696 - 5242666
Alignment:
Q  377 tgttagtgaaaaattacacaaaggccaccat 407  Q
    |||||||||||||||||||||||||||||||    
T  5242696 tgttagtgaaaaattacacaaaggccaccat 5242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 5334289 - 5334331
Alignment:
Q  377 tgttagtgaaaaattacacaaaggccaccatccaattctataa 419  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||    
T  5334289 tgttagtgataaattacacaaaggccaccattcaactctataa 5334331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 5351511 - 5351541
Alignment:
Q  377 tgttagtgaaaaattacacaaaggccaccat 407  Q
    |||||||||||||||||||||||||||||||    
T  5351511 tgttagtgaaaaattacacaaaggccaccat 5351541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 23127613 - 23127527
Alignment:
Q  219 tgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaacccc 305  Q
    ||||||||||||||||| ||||||||  ||  |||| ||||||| |||| ||| | |||| |||||  ||||| |||||||||||||    
T  23127613 tgaaggttcttctgtaagttttgaagctcctcaagtggaagggcataacgtgaagacaataatgtgtgttgtcaatacttcaacccc 23127527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 47985741 - 47985593
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    |||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||  |||| ||| ||| |||||| | |    
T  47985741 tttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaag 47985642  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctgatgccattacatcag 322  Q
     ||||||||||||||||||||||||||||| | |||| ||| |||||||    
T  47985641 acaatgatgtgcattgtctatacttcaacctcagatgacataacatcag 47985593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 47995028 - 47994880
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    |||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||  |||| ||| ||| |||||| | |    
T  47995028 tttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaag 47994929  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctgatgccattacatcag 322  Q
     ||||||||||||||||||||||||||||| | |||| ||| |||||||    
T  47994928 acaatgatgtgcattgtctatacttcaacctcagatgacataacatcag 47994880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 48004315 - 48004167
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    |||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||  |||| ||| ||| |||||| | |    
T  48004315 tttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaag 48004216  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctgatgccattacatcag 322  Q
     ||||||||||||||||||||||||||||| | |||| ||| |||||||    
T  48004215 acaatgatgtgcattgtctatacttcaacctcagatgacataacatcag 48004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 48013600 - 48013452
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    |||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||  |||| ||| ||| |||||| | |    
T  48013600 tttgctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaag 48013501  T
Q  274 tcaatgatgtgcattgtctatacttcaacccctgatgccattacatcag 322  Q
     ||||||||||||||||||||||||||||| | |||| ||| |||||||    
T  48013500 acaatgatgtgcattgtctatacttcaacctcagatgacataacatcag 48013452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 695
Target Start/End: Complemental strand, 47985342 - 47985223
Alignment:
Q  576 cattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaac 675  Q
    ||||| ||||||||||||||| |||||||||  ||   | ||  | ||||||||||||||| |||  ||||| ||||||||||  ||||||||||||||     
T  47985342 cattgattgtagcagtgatgatagtgaatgcattggcaaaaggatctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaa 47985243  T
Q  676 cgagtggaatgaatcaatga 695  Q
    ||||||||||||||||||||    
T  47985242 cgagtggaatgaatcaatga 47985223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 695
Target Start/End: Complemental strand, 47994629 - 47994510
Alignment:
Q  576 cattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaac 675  Q
    ||||| ||||||||||||||| |||||||||  ||   | ||  | ||||||||||||||| |||  ||||| ||||||||||  ||||||||||||||     
T  47994629 cattgattgtagcagtgatgatagtgaatgcattggcaaaaggatctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaa 47994530  T
Q  676 cgagtggaatgaatcaatga 695  Q
    ||||||||||||||||||||    
T  47994529 cgagtggaatgaatcaatga 47994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 695
Target Start/End: Complemental strand, 48003916 - 48003797
Alignment:
Q  576 cattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaac 675  Q
    ||||| ||||||||||||||| |||||||||  ||   | ||  | ||||||||||||||| |||  ||||| ||||||||||  ||||||||||||||     
T  48003916 cattgattgtagcagtgatgatagtgaatgcattggcaaaaggatctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaa 48003817  T
Q  676 cgagtggaatgaatcaatga 695  Q
    ||||||||||||||||||||    
T  48003816 cgagtggaatgaatcaatga 48003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 576 - 695
Target Start/End: Complemental strand, 48013201 - 48013082
Alignment:
Q  576 cattgcttgtagcagtgatgaaagtgaatgctctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaac 675  Q
    ||||| ||||||||||||||| |||||||||  ||   | ||  | ||||||||||||||| |||  ||||| ||||||||||  ||||||||||||||     
T  48013201 cattgattgtagcagtgatgatagtgaatgcattggcaaaaggatctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaa 48013102  T
Q  676 cgagtggaatgaatcaatga 695  Q
    ||||||||||||||||||||    
T  48013101 cgagtggaatgaatcaatga 48013082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 47985505 - 47985405
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| || |||| ||| |||||||||| ||||| ||||||||||||||||| ||  |||||||  |||||| |||||||||||||| || |||| ||||    
T  47985505 aggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagttta 47985406  T
Q  546 t 546  Q
    |    
T  47985405 t 47985405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 48004079 - 48003979
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| || |||| ||| |||||||||| ||||| ||||||||||||||||| ||  |||||||  |||||| |||||||||||||| || |||| ||||    
T  48004079 aggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagttta 48003980  T
Q  546 t 546  Q
    |    
T  48003979 t 48003979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 47994792 - 47994692
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| || |||| ||| |||||||||| ||| | ||||||||||||||||| ||  |||||||  |||||| |||||||||||||| || |||| ||||    
T  47994792 aggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagttta 47994693  T
Q  546 t 546  Q
    |    
T  47994692 t 47994692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 48013364 - 48013264
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| || |||| ||| |||||||||| ||| | ||||||||||||||||| ||  |||||||  |||||| |||||||||||||| || |||| ||||    
T  48013364 aggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagttta 48013265  T
Q  546 t 546  Q
    |    
T  48013264 t 48013264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 8879486 - 8879607
Alignment:
Q  184 ggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgt 283  Q
    ||||||| | |||||||||||||||| |  |||| ||||||| ||| |||||||||| |||| ||  ||||||||||| | ||||||| ||| |||||||    
T  8879486 ggtgataattatccaaattggttaactttcagttgtgaaggtccttgtgtaacttttaaagttcctcaagttgaagggagaaacttgaagtcgatgatgt 8879585  T
Q  284 gcattgtctatacttcaacccc 305  Q
    ||||||||||||| ||||||||    
T  8879586 gcattgtctatacatcaacccc 8879607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 22583638 - 22583504
Alignment:
Q  174 tttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatg 273  Q
    ||||||||||||||||| | ||||||||||||||| ||  | ||   |||||||||||||||||||| ||||||| | |||  |||||||||  |||| |    
T  22583638 tttgcttcctggtgataattatccaaattggttaaacttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaag 22583539  T
Q  274 tc---aatgatgtgcattgtctatacttcaacccc 305  Q
    ||   |||||| |||||||||||| ||||||||||    
T  22583538 tcaataatgatctgcattgtctattcttcaacccc 22583504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 22583280 - 22583239
Alignment:
Q  661 agaaagaagaaaaaccgagtggaatgaatcaatgaaaaatgg 702  Q
    |||||||||||||| |||||||| ||||||||||||| ||||    
T  22583280 agaaagaagaaaaatcgagtggagtgaatcaatgaaagatgg 22583239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 4319604 - 4319523
Alignment:
Q  220 gaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaa 301  Q
    |||||||||||||||| ||||||||||||  |||| ||||| |||| ||||| | |||| ||||||||||||||| ||||||    
T  4319604 gaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatgtgcattgtctattcttcaa 4319523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 4336896 - 4336997
Alignment:
Q  221 aaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaacccctgatgccattacatc 320  Q
    |||||| |||||||| ||||||||||||  | || ||||| |||| ||||| | |||||||||||||||||||| |||||| |||  ||| ||| |||||    
T  4336896 aaggttattctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagacaatgatgtgcattgtctattcttcaagcccaaatgacataacatc 4336995  T
Q  321 ag 322  Q
    ||    
T  4336996 ag 4336997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 4346350 - 4346451
Alignment:
Q  221 aaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaacccctgatgccattacatc 320  Q
    |||||| ||||||||  |||||||||||  |||| ||||| | || ||||| | |||| ||||||||||||||| |||||| ||| |||| ||| |||||    
T  4346350 aaggttattctgtaatctttgaagtccctcaagtggaaggacatagcttgaagacaataatgtgcattgtctattcttcaagcccagatgacataacatc 4346449  T
Q  321 ag 322  Q
    ||    
T  4346450 ag 4346451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 4362546 - 4362647
Alignment:
Q  221 aaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctatacttcaacccctgatgccattacatc 320  Q
    |||||| |||||||| ||||||||||||  |||| |||||  ||| ||||| | |||| ||||||||||||||| |||||| |||  ||| ||| |||||    
T  4362546 aaggttattctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatgtgcattgtctattcttcaagcccatatgacataacatc 4362645  T
Q  321 ag 322  Q
    ||    
T  4362646 ag 4362647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 4122929 - 4122872
Alignment:
Q  237 ttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgcattgtctat 294  Q
    ||||||||||||  |||| ||||| |||| ||||| | ||||||||||||||||||||    
T  4122929 ttttgaagtccctcaagtggaaggacgtagcttgaagacaatgatgtgcattgtctat 4122872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 36213033 - 36212933
Alignment:
Q  446 aggagtggcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaattta 545  Q
    ||||| |||||||  || |||||||||| ||||| ||| | ||| ||||||| ||  |||||||  ||||  |||||||||||||||||||||| |||||    
T  36213033 aggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgattta 36212934  T
Q  546 t 546  Q
    |    
T  36212933 t 36212933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 8062 - 8031
Alignment:
Q  376 gtgttagtgaaaaattacacaaaggccaccat 407  Q
    ||||||||||||||||||||||||||||||||    
T  8062 gtgttagtgaaaaattacacaaaggccaccat 8031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University