View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16983_high_3 (Length: 435)
Name: NF16983_high_3
Description: NF16983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16983_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 9664238 - 9664654
Alignment:
| Q |
1 |
tatcgaaatggattacctgtattatgaaaatatgtagtataaaaagggataaactaaggtccagcgtaaacgctccaaacaaacaaatactacttgagat |
100 |
Q |
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| T |
9664238 |
tatcgaaatggattacatgtattatgaaaatatgtagtataaaaagg-ataaactaaggtccagcgtaaacgctccaaacaaacaaatactacttgagat |
9664336 |
T |
|
| Q |
101 |
cttcttactaagaaaatcttatcttatatcctctaataatgaagacttggtcacaaagtattcgtgtttcttattgtctgtccactcataacccaactat |
200 |
Q |
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| T |
9664337 |
cttcttactaagaaaatcttatcttatatcctctaataatgaagacttggtcacaaagtattcgtgtttcctattgtttgtccactcataacccaactat |
9664436 |
T |
|
| Q |
201 |
gatagcaatatttttcatcgcaatgaatataactttaaaatgaaaacnnnnnnnatatgattaaaataaaaactttgttggcaagcattcacatattatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9664437 |
gatagcaatatttttcatcgcaatgaatataactttaaaatgaaaactttttttatatgattaaaataaaaactttgttggcaagcattcacatattatt |
9664536 |
T |
|
| Q |
301 |
atatatgtaattcctctaaattattatatggttgaaagttatccctttgaataatatttttgctataatttaacatggataatcctttgcttacctctaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9664537 |
atatatgtaattcctctaaattattatatggttgaaagttttccctttgaataatatttttgctataatttaacatggatactcctttgcttacctctaa |
9664636 |
T |
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| Q |
401 |
taaaataaaatgaggata |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
9664637 |
taaaataaaatgaggata |
9664654 |
T |
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