View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16983_low_2 (Length: 457)
Name: NF16983_low_2
Description: NF16983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16983_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 29192035 - 29191608
Alignment:
| Q |
13 |
aaaatcactaccgatccaatacacacaaaaaatatacaaacactccgaaaacactgaatcaagcttcgtcacttccgataatcaaaattcagttgcatgg |
112 |
Q |
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| T |
29192035 |
aaaatcacttccgatccaatacacacaaaaaatatacaaacactccgaaaacactgaatcaagcttcgtcacttccgataatcaaaattcagttgcatgg |
29191936 |
T |
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| Q |
113 |
attacgtaatagcgaaaacagaaacgaaatcgaaaaaggaaaagtgatcggagttacaaggagtttggcgttgaatgcaacggtgaggacgacatcggag |
212 |
Q |
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| T |
29191935 |
attacgtaatagcgaaaacagaaacgaaatcgaaaaaggaaaagttatcggagttacaaggagtttggcgttgaatgcaacggtgaggacgacatcggag |
29191836 |
T |
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| Q |
213 |
aagttgagatcggaggagaaacggaggaaagcgggggtggaggaggagatccatgtgccacgtggaggacggttacggaggcaaacagggagagggtgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29191835 |
aagttgagatcggaggagaaacggaggaaagcggaggtggaggaggagatccatgtgccacgtggaggacggttacggaggcgaacagggagagggtgaa |
29191736 |
T |
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| Q |
313 |
gatcggaggatgaagaagaagtgatggaagaatgtggaaaaggaatgaatcttgcgaaggaaatttcccactcgtcactcagtgagtttgttgctgttga |
412 |
Q |
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| T |
29191735 |
gatcggaggatgaagaagaagtgatggaagaatgtggaaaaggaatgaatcttgcgaaggaaatttcccactcgtcactcagtgagtttgttgttgttga |
29191636 |
T |
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| Q |
413 |
tcttactgcaactgttcccgccattttt |
440 |
Q |
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| T |
29191635 |
tctcactgcaactgttcccgccattttt |
29191608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 57 - 438
Target Start/End: Original strand, 33633842 - 33634218
Alignment:
| Q |
57 |
ccgaaaacactgaatcaagcttcgtcacttccgataatcaaaattcagttgcatggattacgtaatagcg-aaaacagaaacgaaatcgaaaaaggaaaa |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| |
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| T |
33633842 |
ccgaaaacactgaatcaagcttcgtcacttccgataatgaaaattcagttgcatcgattaagtaatagcataaaacagaaatgaaatcgaaaaaggaaaa |
33633941 |
T |
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| Q |
156 |
gtgatcggagttacaaggagtttggcgttgaatgcaacggtgaggacgacatcggagaagttgagatcggaggagaaacggaggaaagcgggggtggagg |
255 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
33633942 |
gtgatcggagttacgaggagtttagcgttgaaggcaacggtgagaacgacgtcggagaagttgagatcggaggagaatcggaggaaagcggaggtggagg |
33634041 |
T |
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| Q |
256 |
aggagatccatgtgccacgtggaggacggttacggaggcaaacagggagagggtgaagatcggag---gatgaagaagaagtgatggaagaatgtggaaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |
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| T |
33634042 |
aggagatccatgtgccacgtggaggacggttacggatgcgaacagggagagggtgaagatcggaggaagaagaagaagaagtgattgaagaatgaggaaa |
33634141 |
T |
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| Q |
353 |
aggaatgaatcttgcgaaggaaatttcccactcgtcactcagtgagtttgttgctgttgatcttactgcaactgttcccgccattt |
438 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33634142 |
aggaatgaatcgtgcgaacgaaatttcccactcgtcactcagtgagt---------ttgatcttactgcaactgttcccgccattt |
33634218 |
T |
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