View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16983_low_5 (Length: 383)
Name: NF16983_low_5
Description: NF16983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16983_low_5 |
 | |
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| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 2759066 - 2758713
Alignment:
| Q |
1 |
cttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759066 |
cttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattg |
2758967 |
T |
|
| Q |
101 |
gccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2758966 |
gccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaacgatgcttctctcatatgcttcacccatgttcttattccttcattggttt |
2758867 |
T |
|
| Q |
201 |
ctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2758866 |
ctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttag |
2758767 |
T |
|
| Q |
301 |
aagatttgtttttaccttaagaagttggaacacttcccccaaggccgatattac |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2758766 |
aagatttgtttttaccttaagaagttggaacacttctcccaaggctgatattac |
2758713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 2856096 - 2856436
Alignment:
| Q |
1 |
cttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| || |||||| | ||| |||||||| |
|
|
| T |
2856096 |
cttgatgtcctgaatctctgatgcaattttatgatggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattg |
2856195 |
T |
|
| Q |
101 |
gccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggttt |
200 |
Q |
| |
|
||| |||| |||| |||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| | | |
|
|
| T |
2856196 |
gccctatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcattgatgt |
2856295 |
T |
|
| Q |
201 |
ctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttag |
300 |
Q |
| |
|
|||||||||| || |||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||| ||||||||||||| | |
|
|
| T |
2856296 |
ctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacctctcaa |
2856395 |
T |
|
| Q |
301 |
aagatttgtttttaccttaagaagttggaacacttccccca |
341 |
Q |
| |
|
||||||||||| | | || || | |||||||||||||||| |
|
|
| T |
2856396 |
aagatttgtttcttcttttaggaactggaacacttccccca |
2856436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 2768917 - 2768611
Alignment:
| Q |
5 |
atgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccg |
104 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||||| || || |||||||| | ||| |||||||| |
|
|
| T |
2768917 |
atgtcctgaatctctaatgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccc |
2768818 |
T |
|
| Q |
105 |
tatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgc |
204 |
Q |
| |
|
||||| ||| |||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
2768817 |
tatgggtcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttggtgtctgc |
2768718 |
T |
|
| Q |
205 |
ttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaaga |
304 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||| |||||||||| || || ||| |
|
|
| T |
2768717 |
ttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacaccactcagcaga |
2768618 |
T |
|
| Q |
305 |
tttgttt |
311 |
Q |
| |
|
||||||| |
|
|
| T |
2768617 |
tttgttt |
2768611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 341
Target Start/End: Complemental strand, 2748819 - 2748510
Alignment:
| Q |
32 |
tgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaa |
131 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||| || || |||||||| | ||||||||||||| |||| || |||||||||||||| |||| |
|
|
| T |
2748819 |
tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaaggtattcatcaa |
2748720 |
T |
|
| Q |
132 |
ttatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttctatctgcatc |
231 |
Q |
| |
|
| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || || ||||||||||| || |||||||| |||||||| |
|
|
| T |
2748719 |
tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatc |
2748620 |
T |
|
| Q |
232 |
tttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgtttttaccttaagaagttggaac |
331 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||||||| | | || || | |||||| |
|
|
| T |
2748619 |
tttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaac |
2748520 |
T |
|
| Q |
332 |
acttccccca |
341 |
Q |
| |
|
|||||||||| |
|
|
| T |
2748519 |
acttccccca |
2748510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 2838889 - 2839196
Alignment:
| Q |
1 |
cttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || || ||| ||||| || |||||||||||| |
|
|
| T |
2838889 |
cttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgc---ataaagatctgcatccaggaggattg |
2838985 |
T |
|
| Q |
101 |
gccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggttt |
200 |
Q |
| |
|
||| |||| || || ||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||| | | |
|
|
| T |
2838986 |
gccctatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttgatgt |
2839085 |
T |
|
| Q |
201 |
ctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttag |
300 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||| ||| | |||||| ||||||||||||| || |
|
|
| T |
2839086 |
ctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatgatctcaagttcatctttgatatctgaaaaatctctgtgtacacctctcag |
2839185 |
T |
|
| Q |
301 |
aagatttgttt |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
2839186 |
aagatttgttt |
2839196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 2818409 - 2818099
Alignment:
| Q |
1 |
cttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||||| ||||||| || ||| |||| ||||||| | | ||||| || || |||| |||| |
|
|
| T |
2818409 |
cttgatgtcctgaatctctgatgcaatttcataacggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattg |
2818310 |
T |
|
| Q |
101 |
gccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggttt |
200 |
Q |
| |
|
| | ||||||||| |||||||||| ||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
2818309 |
gtcctatggatcaaaagaaggtattcatcaatgacatcttcaatgcgaaatgatgcatctctcacttgcttcacccatgttcttattccatcattggcgt |
2818210 |
T |
|
| Q |
201 |
ctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttag |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| | |||||| ||||||||||||| || |
|
|
| T |
2818209 |
ccgcttcatctgctgcccttctatctgcatctttgaggaagacttggatgctttctagttcatctttgatgtctgaaaaatctctgtgtacacctctcag |
2818110 |
T |
|
| Q |
301 |
aagatttgttt |
311 |
Q |
| |
|
||| ||||||| |
|
|
| T |
2818109 |
aagctttgttt |
2818099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 2790184 - 2789900
Alignment:
| Q |
36 |
ggggaatcaaagttttgattgggcttgtaatcttgttgaatacagat---ccgctaccaggaggattgg------ccgtatggatcagccgaaggtattc |
126 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| ||||| |||| | || |||| |||||||| || |||| || |||||||||||||| |
|
|
| T |
2790184 |
ggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattc |
2790085 |
T |
|
| Q |
127 |
gtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttctatct |
226 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| || ||| ||||| |
|
|
| T |
2790084 |
atcgatgatatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgcttcatctgcagctcttatatct |
2789985 |
T |
|
| Q |
227 |
gcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt |
311 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||| |
|
|
| T |
2789984 |
gcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctaaaaaatctttgtgcacaccactcaggagatttgttt |
2789900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 2797201 - 2796903
Alignment:
| Q |
13 |
aatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatc |
112 |
Q |
| |
|
|||||| ||||| || | |||| ||| |||||| ||||||||| | |||| ||||||| || || |||||||| || ||||||| |||| |||| ||| |
|
|
| T |
2797201 |
aatctcagatgctatctggtgaagggaaatcaatgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatc |
2797102 |
T |
|
| Q |
113 |
agccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctg |
212 |
Q |
| |
|
||| |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| || | |||||||| |
|
|
| T |
2797101 |
agctgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagatgcttcacccaagttcttattccatcattggtgtcggtttcatctg |
2797002 |
T |
|
| Q |
213 |
ctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt |
311 |
Q |
| |
|
| || ||| ||||||||||||||||||| | ||||||||| |||||||||||| |||||||| | ||||||||||| |||| || || |||||||||| |
|
|
| T |
2797001 |
cagctcttgtatctgcatctttgaggaaaacttgaatgctctcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcagatttgttt |
2796903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 5412755 - 5412477
Alignment:
| Q |
5 |
atgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccg |
104 |
Q |
| |
|
||||| |||||||| ||||| || | ||| ||||||||||||||||||| ||||| ||||||| || || ||||| || ||| |||||||| || |
|
|
| T |
5412755 |
atgtcctgaatctcagatgctatctgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccc |
5412656 |
T |
|
| Q |
105 |
tatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgc |
204 |
Q |
| |
|
|||| || |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |
|
|
| T |
5412655 |
tatgcattagccgatggtattcgtcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccatcattggcgtccgc |
5412556 |
T |
|
| Q |
205 |
ttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatct |
283 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||| ||||||| |||| |||||||||||||||||| | |||||| |
|
|
| T |
5412555 |
ttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatttctagttcatctttgatgtctgaaaaatct |
5412477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 32 - 311
Target Start/End: Complemental strand, 2807091 - 2806803
Alignment:
| Q |
32 |
tgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatcc---gctaccaggaggattgg------ccgtatggatcagccgaaggt |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||| |||||| || ||||||||| ||| || |||| ||||||||| ||| |
|
|
| T |
2807091 |
tgacggggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggt |
2806992 |
T |
|
| Q |
123 |
attcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttct |
222 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
2806991 |
attcatcgatgatatcttcaatgcgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgcttcatctgctgctcttct |
2806892 |
T |
|
| Q |
223 |
atctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| | || ||| ||||||||||| ||||||||||||||| |
|
|
| T |
2806891 |
atctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgtgtgtacaccttttagaagatttgttt |
2806803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 2755782 - 2755699
Alignment:
| Q |
115 |
ccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggt |
198 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2755782 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccaagttcttattccatcattggt |
2755699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 22104329 - 22104280
Alignment:
| Q |
218 |
cttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
22104329 |
cttctatcagcatctttgaggaaggcttggatgctttcaagttcatcttt |
22104280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 30990142 - 30990226
Alignment:
| Q |
222 |
tatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatt |
306 |
Q |
| |
|
|||| |||||||| || ||| |||||||||||||||||||||||| || ||| | || || ||||| ||||||||||| ||||| |
|
|
| T |
30990142 |
tatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctgaaaattccttgtgaacacctcttagcagatt |
30990226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 3304343 - 3304417
Alignment:
| Q |
125 |
tcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtt |
199 |
Q |
| |
|
||||| |||| |||||| |||||||| ||| ||||||| | ||||||||||||||| | | ||||||||||||| |
|
|
| T |
3304343 |
tcgtcgattacatcttctatgcgaaaagatacttctcttacttgcttcacccatgttttgactccttcattggtt |
3304417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 22621766 - 22621836
Alignment:
| Q |
204 |
cttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtct |
274 |
Q |
| |
|
||||| |||| || |||||||| ||||| || |||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
22621766 |
cttcacctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtct |
22621836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 274
Target Start/End: Complemental strand, 21936858 - 21936703
Alignment:
| Q |
122 |
tattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttca---ttggtttctgcttcatctgctgccc |
218 |
Q |
| |
|
||||| ||||| |||||||| |||| ||| | |||||| || | ||||||||||| ||| | | ||||||| ||| | ||| | ||| |||| || | |
|
|
| T |
21936858 |
tattcatcaatgatatcttctatgcaaaaagctgcttccctaagctgcttcacccaagttttaactccttcactattgttctctccatcagctgcagctc |
21936759 |
T |
|
| Q |
219 |
ttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtct |
274 |
Q |
| |
|
||||||| ||||| || |||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
21936758 |
ttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtct |
21936703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 21945247 - 21945190
Alignment:
| Q |
210 |
ctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt |
267 |
Q |
| |
|
||||||| ||| |||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
21945247 |
ctgctgctcttttatcagcatccttgaggaatgcttgaatgctttcaagttcatcttt |
21945190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 22179023 - 22178974
Alignment:
| Q |
218 |
cttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
22179023 |
cttctatcagcatctttgaggaaggcttggatgctttcaaattcatcttt |
22178974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 22631320 - 22631372
Alignment:
| Q |
215 |
gcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt |
267 |
Q |
| |
|
||||||||||| ||||| |||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
22631320 |
gcccttctatccgcatcgttgatgaagacttcaattctttcaagttcatcttt |
22631372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 22636357 - 22636409
Alignment:
| Q |
215 |
gcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatcttt |
267 |
Q |
| |
|
||||||||||| ||||| |||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
22636357 |
gcccttctatccgcatcgttgatgaagacttcaattctttcaagttcatcttt |
22636409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 40 - 311
Target Start/End: Original strand, 6477 - 6748
Alignment:
| Q |
40 |
aatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatct |
139 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| || || ||||||| |||||||| |||||| |||||||||||||||||||||| ||||| | |||| |
|
|
| T |
6477 |
aatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccctatggatcagccgaaggtattcatcaataacatct |
6576 |
T |
|
| Q |
140 |
tcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttctatctgcatctttgagga |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
6577 |
tcaatgcgaaatgatgcttccctcatatgcttcacccaagttcttattccatcattagtgtctgcttcatctgcagcctttctgtctgcatctttgagga |
6676 |
T |
|
| Q |
240 |
agatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgttt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
6677 |
agatttgaatgctttcaagttcatctttgatgtctgtaaaatctgtgtgtacacctctcagaagatttgttt |
6748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 34975131 - 34975040
Alignment:
| Q |
204 |
cttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacct |
295 |
Q |
| |
|
||||| |||| || |||||||| | ||||||||||||| |||||||||||| ||||||| ||| |||||| || |||||||| |||||| |
|
|
| T |
34975131 |
cttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacacct |
34975040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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