View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16983_low_6 (Length: 337)
Name: NF16983_low_6
Description: NF16983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16983_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 4194239 - 4194533
Alignment:
| Q |
14 |
aaccaaccatattacaattaatacaattccaatccactccattacatgtcattccaccaatccaaaagcatggatattgtgaatgacgctcaacaagaca |
113 |
Q |
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| T |
4194239 |
aaccaaccatattacaattaatacaattccaatccactc-----------attccaccaatccaaaagcatggatattgtgaatgacgctcaacaagaca |
4194327 |
T |
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| Q |
114 |
ttaatgtattttgttttcccaaacagtgtgatactattttagtcctcaatttcaactagactgaatgtcagaaaatatggtagcagtatctagtattgcg |
213 |
Q |
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| T |
4194328 |
ttaatgtattttgttttcccaaacagtgtgatactattttagtcctcaatttcaactagactgaatgtcagaaaatatggtagcagtatctagtattgcg |
4194427 |
T |
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| Q |
214 |
tataacttggccacatcatctaccaaaaagtttcaacacaggactagttatatagacatacatcacgaaacaaatcacgcaaatagatggaaattatagg |
313 |
Q |
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| T |
4194428 |
tataacttggccacatcatctaccaaaaagtttcaacacaggactagt--tatagacatacatcacgaaacaaatcacgcaaatagatggaaattatagg |
4194525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 50772932 - 50772789
Alignment:
| Q |
80 |
agcatggatattgtgaatgacgctcaacaagacattaatgtattttgttttcccaaacagtgtgatactattttagtcctcaatttcaactagactgaat |
179 |
Q |
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||||||||| ||||||||||||||| |||||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50772932 |
agcatggatcttgtgaatgacgctcgacaagacattaaagtgttt-gttttcccaaacgctgtgatactattttagtcctcaatttcaactagactgaat |
50772834 |
T |
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| Q |
180 |
gtcagaaaatatggtagcagtatctagtattgcgtataacttggc |
224 |
Q |
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| T |
50772833 |
atcagaaaatatggtaggagaatctagtattgcatacaacttggc |
50772789 |
T |
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