View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16984_high_11 (Length: 250)
Name: NF16984_high_11
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 51962914 - 51963154
Alignment:
| Q |
3 |
tgcatgtagatagttttttaattgcatataggtcagctaaatatactctcnnnnnnncccc-ttaaccttcatgttctcaattaaagaggtttccataat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51962914 |
tgcatgtagatagttttttaattgcatataggtcagctaaatatactctctttttttcccccttaaccttcatgttctcaattaaagaggtttccataat |
51963013 |
T |
|
| Q |
102 |
tcagagttcgatcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataacttgagttcaaccacttgattagcggcatgg |
201 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51963014 |
tcagagtttggtcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataacttgagttcaaccacttgattagcggcatgg |
51963113 |
T |
|
| Q |
202 |
gttaatattatattcaaaagtttgaaattgatagtataatc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
51963114 |
gttaatattatattcaaaagtttgaaattgatagtataatc |
51963154 |
T |
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