View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16984_high_13 (Length: 240)

Name: NF16984_high_13
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16984_high_13
NF16984_high_13
[»] chr3 (16 HSPs)
chr3 (21-240)||(53065492-53065711)
chr3 (19-240)||(53331608-53331830)
chr3 (19-240)||(53335292-53335514)
chr3 (19-240)||(53338969-53339191)
chr3 (19-170)||(53363565-53363717)
chr3 (68-240)||(53072652-53072821)
chr3 (19-67)||(53072661-53072709)
chr3 (68-125)||(53331782-53331839)
chr3 (68-125)||(53335466-53335523)
chr3 (68-125)||(53339143-53339200)
chr3 (68-125)||(53363669-53363726)
chr3 (21-63)||(53356946-53356988)
chr3 (19-67)||(53065548-53065596)
chr3 (73-121)||(53356946-53356994)
chr3 (68-125)||(53065481-53065538)
chr3 (211-240)||(53363537-53363566)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 53065492 - 53065711
Alignment:
Q  21 aagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacagct 120  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  53065492 aagagcatagcataacatggtctcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaatttatcagtaacagct 53065591  T
Q  121 cctctttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactctttctc 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53065592 cctctttccttttctcaagacgctctttttcttcttcaatcagcatccaccgcttccttttctcttcatgctccttgaagagttcagcaaactctttctc 53065691  T
Q  221 atgcttcaagtatgcatgct 240  Q
    ||||||||||||||||||||    
T  53065692 atgcttcaagtatgcatgct 53065711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53331830 - 53331608
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53331830 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53331731  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactcttt 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  53331730 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgcttcttgaagagttcagcaaacttttt 53331631  T
Q  218 ctcatgcttcaagtatgcatgct 240  Q
    |||||||||||||||||||||||    
T  53331630 ctcatgcttcaagtatgcatgct 53331608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53335514 - 53335292
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53335514 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53335415  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactcttt 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  53335414 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgcttcttgaagagttcagcaaacttttt 53335315  T
Q  218 ctcatgcttcaagtatgcatgct 240  Q
    |||||||||||||||||||||||    
T  53335314 ctcatgcttcaagtatgcatgct 53335292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53339191 - 53338969
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53339191 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53339092  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactcttt 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  53339091 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgcttcttgaagagttcagcaaacttttt 53338992  T
Q  218 ctcatgcttcaagtatgcatgct 240  Q
    |||||||||||||||||||||||    
T  53338991 ctcatgcttcaagtatgcatgct 53338969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 53363717 - 53363565
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53363717 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53363618  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccac 170  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  53363617 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccac 53363565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 53072652 - 53072821
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctctttccctttctcaagacgctctttttcttcttcaatcagcatc 167  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||     
T  53072652 attctctggccaagagcatagcataacatggtttcaacctatcagtaactgctcctctttccctttttcaagacgctacttttcttcttcaatcagcat- 53072750  T
Q  168 caccgcttctttttctcttcatgctccttgaagagttcagcaaactctttctcatgcttcaagtatgcatgct 240  Q
      ||||||||||| |||| |||||| |||||||||||||||||||  ||||||||||| ||||||||||||||    
T  53072751 --ccgcttcttttcctctgcatgcttcttgaagagttcagcaaaccttttctcatgctccaagtatgcatgct 53072821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 53072661 - 53072709
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53072661 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53072709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53331839 - 53331782
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53331839 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53331782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53335523 - 53335466
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53335523 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53335466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53339200 - 53339143
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53339200 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53339143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53363726 - 53363669
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53363726 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53363669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 53356988 - 53356946
Alignment:
Q  21 aagagcatagcataacatggtttcaacctatcagtaactgctc 63  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  53356988 aagagcatagcataacatggtttcaacctatcagtaacagctc 53356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 53065548 - 53065596
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 67  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  53065548 ccaagagcatagcataacatggtttcaatttatcagtaacagctcctct 53065596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 53356994 - 53356946
Alignment:
Q  73 caggccaagagcatagcataatatggtttcaacttatcagtaacagctc 121  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  53356994 caggcaaagagcatagcataacatggtttcaacctatcagtaacagctc 53356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 53065481 - 53065538
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||| ||| ||||||||||||||| ||||| ||||| |||||||||| ||||||||    
T  53065481 attctctggcaaagagcatagcataacatggtctcaacctatcagtaactgctcctct 53065538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 53363566 - 53363537
Alignment:
Q  211 actctttctcatgcttcaagtatgcatgct 240  Q
    ||||||||||||||||||||||||||||||    
T  53363566 actctttctcatgcttcaagtatgcatgct 53363537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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