View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16984_high_2 (Length: 458)
Name: NF16984_high_2
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 1385732 - 1385505
Alignment:
| Q |
17 |
aatatctggctcatgaaacattttattagggatttattggtacgccagaaaaattcagtgtccctcagagattagcttcgttgattagatttcatgaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1385732 |
aatatctggctcatgaaacattttattagggatttattggtacgccagaaaaatttagcgtccctcagagattagcttcgttgattagatttcatgaaaa |
1385633 |
T |
|
| Q |
117 |
gcggaaggaacgaaattttgacnnnnnnnttcgttatactgttcgtaaaga---agtagcattgaggtatggttcttactatcattatttttagattgaa |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1385632 |
gcggaaggaacgaaattttgacaaaaaaattcgttatactgttcgtaaagaagtagtagcattgaggtatggttcttactaacattatttttagattgaa |
1385533 |
T |
|
| Q |
214 |
cttgtttcgaatatttgtctgcattgaa |
241 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
1385532 |
cttgtttcgaatatttgtctgcgttgaa |
1385505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 285 - 441
Target Start/End: Complemental strand, 1373156 - 1373000
Alignment:
| Q |
285 |
gttgtaggcattgtggcatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggacttatgtcggc |
384 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1373156 |
gttgtaggcaatgtaacatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggacttatgtgggc |
1373057 |
T |
|
| Q |
385 |
aaacaaggtaaatgggaactgtgttaattcctcatgtcaattgctatctttttgttt |
441 |
Q |
| |
|
||| |||||||||||||||| |||||||| |||||||||||| |||| |||||||| |
|
|
| T |
1373056 |
aaataaggtaaatgggaactatgttaattattcatgtcaattgttatccttttgttt |
1373000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 1384958 - 1384869
Alignment:
| Q |
292 |
gcattgtggcatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggacttatgtc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1384958 |
gcattgtggcatcagtgagaagtgcacgccaatgatgcggcgtggacctgaagggccaagaaccctctgcaatgcttgtggactcatgtc |
1384869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 1385509 - 1385480
Alignment:
| Q |
259 |
ttgaattatattcgtaaatgcttttggttg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1385509 |
ttgaattatattcgtaaatgcttttggttg |
1385480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University