View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16984_low_1 (Length: 541)
Name: NF16984_low_1
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Original strand, 49931044 - 49931555
Alignment:
| Q |
11 |
cacagatagataagagaagttggaacagaagtttcatctttccttcctatataagtttgtagagataagagattggacatgtccttttatattacacaga |
110 |
Q |
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| T |
49931044 |
cacagatagataagagaagttggaacagaagtttcatctttccttcctatataagtttgtagagataacagattggacatgtccttttatattacacaga |
49931143 |
T |
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| Q |
111 |
cacaaacatcattcttccttgatagtatttctcacatcctaaacaagccatgttcaatttaaacttcaagtcaatttgcaggtctcagaaaggtgaaaag |
210 |
Q |
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| T |
49931144 |
cacaaacatcattcttccttgatagtatttctcacatcctaaacaagccatgttcaatttaaacttcaagtcaatttgcaggtctcagaaaggtgaaaag |
49931243 |
T |
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| Q |
211 |
ctttcatctggtatgccattgaaaaataacttcagtaaaccattgacaggtgtcaactatagcccaaacctatgttacataccaactgatctaaccatgt |
310 |
Q |
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| T |
49931244 |
ctttcatctggtatgccattgaaaaataacttcagtaaaccattgacaggtgtcaactatagcccaaacctatgttacataccaactgatctaaccatgt |
49931343 |
T |
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| Q |
311 |
gacgaataagaggagcaacatgaacatgaatactagagacaaagcctgccagttgtttctttcaagcagaacattagcattgtcaagcgtcttctttact |
410 |
Q |
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| T |
49931344 |
gacgaataagaggagcaacatgaacatgaatactagagacaaagcctgccagttgtttctttcaagcagaacattagcattgtcaaccgtcttctttact |
49931443 |
T |
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| Q |
411 |
aagtgaacagcatatgcattgtatgctagatttagaaaatgaggacgaagctcttcgaatacttcatctctttcagcttgtgaacaatgtttagcacaaa |
510 |
Q |
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| T |
49931444 |
aagtgaacagcatatgcattgtatgctagatttagaaaatgaggacgaagctcttcgaatacttcatctctttcagcttgtgaacaatgtttagcacaaa |
49931543 |
T |
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| Q |
511 |
tctttcaaatgc |
522 |
Q |
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| T |
49931544 |
tctttcaaatgc |
49931555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 370 - 518
Target Start/End: Original strand, 49939218 - 49939366
Alignment:
| Q |
370 |
tttcaagcagaacattagcattgtcaagcgtcttctttactaagtgaacagcatatgcattgtatgctagatttagaaaatgaggacgaagctcttcgaa |
469 |
Q |
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| T |
49939218 |
tttcaagcagaccattaccattgtcaagcatcttctttaccaagtgaacagcatatgcgctgtaggctagatttagaaaatgcggacgaagctcttcaaa |
49939317 |
T |
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| Q |
470 |
tacttcatctctttcagcttgtgaacaatgtttagcacaaatctttcaa |
518 |
Q |
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| T |
49939318 |
tacttgatccctttcagcttgtgaacaatgtttgacacaagtctttcaa |
49939366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 371
Target Start/End: Original strand, 49939028 - 49939127
Alignment:
| Q |
272 |
gcccaaacctatgttacataccaactgatctaaccatgtgacgaataagaggagcaacatgaacatgaatactagagacaaagcctgccagttgtttctt |
371 |
Q |
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| T |
49939028 |
gcccaagcctaagttacgtaccaactgatccaaccatgtggcgaagaagaggagcaacatgaccacgaagagtggagataaagcctgccagttgtttctt |
49939127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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