View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16984_low_11 (Length: 296)
Name: NF16984_low_11
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 53065802 - 53066092
Alignment:
| Q |
1 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaagaaacaaccataagct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53065802 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaagaaacaaccataagct |
53065901 |
T |
|
| Q |
101 |
gcggttatttgatcaaatgcaaaaacagcagagagagttaccttccaacgtctttgcgtaaatcgggcatttggtttcttttggcttctcaccatcataa |
200 |
Q |
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| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53065902 |
gaggttatttgatcaaatgcaaacacagcagagagagttaccttccaacgtctttgcgtaaatcgggcatttgatttcttttggcttctcaccatcataa |
53066001 |
T |
|
| Q |
201 |
agaagctctccatcagtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctactctctgctcct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
53066002 |
agaagctctccatcagtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctactttttgctcct |
53066092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 53331522 - 53331239
Alignment:
| Q |
1 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaagaaacaaccataagct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53331522 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaataaacaaccataagct |
53331423 |
T |
|
| Q |
101 |
gcggttatttgatcaaatgcaaaaacag---cagagagagttaccttccaacgtctttgcgtaaatcgggcatttggtttcttttggcttctcaccatca |
197 |
Q |
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| |||||||||| ||||||||| | || ||||||||||||||| ||| |||| |||||||| |||||||| | |||||||||||||||||||||| |
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| T |
53331422 |
gaggttatttgaccaaatgcaagcagagagagagagagagttacctttcaatgtctctgcgtaaaccgggcattcgaattcttttggcttctcaccatca |
53331323 |
T |
|
| Q |
198 |
taaagaagctctccatcagtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctact |
281 |
Q |
| |
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||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53331322 |
taaagcagatctccctcggtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctact |
53331239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 53335206 - 53334923
Alignment:
| Q |
1 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaagaaacaaccataagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
53335206 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaataaacaaccataagct |
53335107 |
T |
|
| Q |
101 |
gcggttatttgatcaaatgcaaaaacag---cagagagagttaccttccaacgtctttgcgtaaatcgggcatttggtttcttttggcttctcaccatca |
197 |
Q |
| |
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| |||||||||| ||||||||| | || ||||||||||||||| ||| |||| |||||||| |||||||| | |||||||||||||||||||||| |
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| T |
53335106 |
gaggttatttgaccaaatgcaagcagagagagagagagagttacctttcaatgtctctgcgtaaaccgggcattcgaattcttttggcttctcaccatca |
53335007 |
T |
|
| Q |
198 |
taaagaagctctccatcagtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctact |
281 |
Q |
| |
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||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53335006 |
taaagcagatctccctcggtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctact |
53334923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 53338883 - 53338600
Alignment:
| Q |
1 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaagaaacaaccataagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53338883 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagactgtttattattccatatgaaacaagagaataaacaaccataagct |
53338784 |
T |
|
| Q |
101 |
gcggttatttgatcaaatgcaaaaacag---cagagagagttaccttccaacgtctttgcgtaaatcgggcatttggtttcttttggcttctcaccatca |
197 |
Q |
| |
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| |||||||||| ||||||||| | || ||||||||||||||| ||| |||| |||||||| |||||||| | |||||||||||||||||||||| |
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| T |
53338783 |
gaggttatttgaccaaatgcaagcagagagagagagagagttacctttcaatgtctctgcgtaaaccgggcattcgaattcttttggcttctcaccatca |
53338684 |
T |
|
| Q |
198 |
taaagaagctctccatcagtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctact |
281 |
Q |
| |
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||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53338683 |
taaagcagatctccctcggtactttctactttttgctcctttggcttcttcccatggagaagatcctcctttgtgctttctact |
53338600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 53072963 - 53073028
Alignment:
| Q |
193 |
catcataaagaagctctccatcagtactttctactttttgctcctttggcttcttcccatggagaag |
259 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53072963 |
catcataaaga-gctctccctcagtactttctactttttgctcctttggcttcttcccatggagaag |
53073028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 53072870 - 53072929
Alignment:
| Q |
78 |
aagagaagaaacaaccataagctgcggttatttgatcaaatgcaaaaacagcagagagag |
137 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
53072870 |
aagagaagaaacaaccataagctgaggttatttgatcaaatgcaaacacagcagagagag |
53072929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 53356854 - 53356799
Alignment:
| Q |
1 |
taattggacaccacttgaggtctattgtatctatatctttcagcttgttatagact |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
53356854 |
taattggacaccacttgaggtctattgtatctatatctttcagcttattatagact |
53356799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 53066074 - 53066114
Alignment:
| Q |
219 |
ctttctactttttgctcctttggcttcttcccatggagaag |
259 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||||| |
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| T |
53066074 |
ctttctactttttgctccttccgcttcttcccatgaagaag |
53066114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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