View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16984_low_12 (Length: 289)
Name: NF16984_low_12
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 55958525 - 55958788
Alignment:
| Q |
17 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55958525 |
ataaacttctctgcatcataccaatatttgggatctcttcacattgcccaagcatttactaacacattagtctttattggtatttcatatccacctatgt |
55958624 |
T |
|
| Q |
117 |
tgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatc |
216 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55958625 |
tgcatgcttccctgcattctcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatc |
55958724 |
T |
|
| Q |
217 |
attctcatatattctc-ttttacctttaaaggtttctcttatttcagattgtgccttcttcatc |
279 |
Q |
| |
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| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55958725 |
actctcatatgttctctttttacctttaaaggtttctcttatttcagattgtgccttcttcatc |
55958788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 55954969 - 55955232
Alignment:
| Q |
17 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgt |
116 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
55954969 |
ataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgt |
55955068 |
T |
|
| Q |
117 |
tgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatc |
216 |
Q |
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|||| ||||||||||||| |||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
55955069 |
tgcaagcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatc |
55955168 |
T |
|
| Q |
217 |
attctcatatattctc-ttttacctttaaaggtttctcttatttcagattgtgccttcttcatc |
279 |
Q |
| |
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| |||||||||||||| |||| ||||||| | |||||||||||| |||||||| ||||||||| |
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| T |
55955169 |
actctcatatattctctttttccctttaacagcttctcttatttcggattgtgctttcttcatc |
55955232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 41795735 - 41795956
Alignment:
| Q |
17 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgt |
116 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||||||||| |||||| |
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| T |
41795735 |
ataaaattatctgcatcatatcaatatttgggatctcttccgattgcccatgcatttactatcacactagtctttataggtatttcatatccacctatgt |
41795834 |
T |
|
| Q |
117 |
tgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaac--ctcatagtttctttgatcactgaattcaagtaactaagttcttgtaga |
214 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||| |||||| |||||| |
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| T |
41795835 |
tgcacgcttccctgcattctcttggaagcaaagtaaaaggtggatgtaacctctcattgtttctttgatcactgactttaagtaaccaagttcatgtaga |
41795934 |
T |
|
| Q |
215 |
tcattctcatatattctctttt |
236 |
Q |
| |
|
||| |||||||||||||||||| |
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| T |
41795935 |
tcactctcatatattctctttt |
41795956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 12425296 - 12425559
Alignment:
| Q |
17 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgt |
116 |
Q |
| |
|
||||||||||| |||||| |||||| || |||||||||||| |||||||| ||||||| || | ||||| |||| ||||||||||||||| |||||| |
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|
| T |
12425296 |
ataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttttaaaggtatttcatatccacctatgt |
12425395 |
T |
|
| Q |
117 |
tgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatc |
216 |
Q |
| |
|
|||| ||||||||||||| ||| || ||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||| | ||||| |||||||| |
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|
| T |
12425396 |
tgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacctcagggtttctttgatcactaacttcaagtacccaagtttatgtagatc |
12425495 |
T |
|
| Q |
217 |
attctcatatattctctt-ttacctttaaaggtttctcttatttcagattgtgccttcttcatc |
279 |
Q |
| |
|
| |||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
12425496 |
actctcatatattctcttcttacctttaacagcttctcttatttcagcttgtgccttcttcatc |
12425559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 12268389 - 12268136
Alignment:
| Q |
17 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgt |
116 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||| || | |||||||||||| |||||||||||||| |||||| |
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|
| T |
12268389 |
ataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcctatgt |
12268290 |
T |
|
| Q |
117 |
tgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatc |
216 |
Q |
| |
|
|||||||||||||||||| |||| |||| | | | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| || | ||| |
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| T |
12268289 |
tgcatgcttccctgcattctcttgtaagtattgcaccaggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttcatgcaaatc |
12268190 |
T |
|
| Q |
217 |
attctcatatattctctt-ttacctttaaaggtttctcttatttcagattgtgc |
269 |
Q |
| |
|
| | ||||| |||||||| ||||||||| | |||||||||||||| |||||| |
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|
| T |
12268189 |
actttcataaattctcttcttacctttacaaacttctcttatttcagcttgtgc |
12268136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7141688 - 7141631
Alignment:
| Q |
17 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcattta |
74 |
Q |
| |
|
|||||| |||| ||||||| ||||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
7141688 |
ataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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