View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16984_low_17 (Length: 240)

Name: NF16984_low_17
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16984_low_17
NF16984_low_17
[»] chr3 (16 HSPs)
chr3 (21-240)||(53065492-53065711)
chr3 (19-240)||(53331608-53331830)
chr3 (19-240)||(53335292-53335514)
chr3 (19-240)||(53338969-53339191)
chr3 (19-170)||(53363565-53363717)
chr3 (68-240)||(53072652-53072821)
chr3 (19-67)||(53072661-53072709)
chr3 (68-125)||(53331782-53331839)
chr3 (68-125)||(53335466-53335523)
chr3 (68-125)||(53339143-53339200)
chr3 (68-125)||(53363669-53363726)
chr3 (21-63)||(53356946-53356988)
chr3 (19-67)||(53065548-53065596)
chr3 (73-121)||(53356946-53356994)
chr3 (68-125)||(53065481-53065538)
chr3 (211-240)||(53363537-53363566)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 53065492 - 53065711
Alignment:
Q  21 aagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacagct 120  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  53065492 aagagcatagcataacatggtctcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaatttatcagtaacagct 53065591  T
Q  121 cctctttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactctttctc 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53065592 cctctttccttttctcaagacgctctttttcttcttcaatcagcatccaccgcttccttttctcttcatgctccttgaagagttcagcaaactctttctc 53065691  T
Q  221 atgcttcaagtatgcatgct 240  Q
    ||||||||||||||||||||    
T  53065692 atgcttcaagtatgcatgct 53065711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53331830 - 53331608
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53331830 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53331731  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactcttt 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  53331730 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgcttcttgaagagttcagcaaacttttt 53331631  T
Q  218 ctcatgcttcaagtatgcatgct 240  Q
    |||||||||||||||||||||||    
T  53331630 ctcatgcttcaagtatgcatgct 53331608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53335514 - 53335292
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53335514 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53335415  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactcttt 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  53335414 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgcttcttgaagagttcagcaaacttttt 53335315  T
Q  218 ctcatgcttcaagtatgcatgct 240  Q
    |||||||||||||||||||||||    
T  53335314 ctcatgcttcaagtatgcatgct 53335292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53339191 - 53338969
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53339191 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53339092  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgctccttgaagagttcagcaaactcttt 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  53339091 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccaccgcttctttttctcttcatgcttcttgaagagttcagcaaacttttt 53338992  T
Q  218 ctcatgcttcaagtatgcatgct 240  Q
    |||||||||||||||||||||||    
T  53338991 ctcatgcttcaagtatgcatgct 53338969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 53363717 - 53363565
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataatatggtttcaacttatcagtaacag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53363717 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctctattctcaggccaagagcatagcataacatggtttcaacttatcagtaacag 53363618  T
Q  119 ctcctc-tttccctttctcaagacgctctttttcttcttcaatcagcatccac 170  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  53363617 ctcctcttttccctttcccaagacgctctttttcttcttcaatcagcatccac 53363565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 53072652 - 53072821
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctctttccctttctcaagacgctctttttcttcttcaatcagcatc 167  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||     
T  53072652 attctctggccaagagcatagcataacatggtttcaacctatcagtaactgctcctctttccctttttcaagacgctacttttcttcttcaatcagcat- 53072750  T
Q  168 caccgcttctttttctcttcatgctccttgaagagttcagcaaactctttctcatgcttcaagtatgcatgct 240  Q
      ||||||||||| |||| |||||| |||||||||||||||||||  ||||||||||| ||||||||||||||    
T  53072751 --ccgcttcttttcctctgcatgcttcttgaagagttcagcaaaccttttctcatgctccaagtatgcatgct 53072821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 53072661 - 53072709
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53072661 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53072709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53331839 - 53331782
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53331839 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53331782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53335523 - 53335466
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53335523 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53335466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53339200 - 53339143
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53339200 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53339143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 53363726 - 53363669
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  53363726 attctcaggccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 53363669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 53356988 - 53356946
Alignment:
Q  21 aagagcatagcataacatggtttcaacctatcagtaactgctc 63  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  53356988 aagagcatagcataacatggtttcaacctatcagtaacagctc 53356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 53065548 - 53065596
Alignment:
Q  19 ccaagagcatagcataacatggtttcaacctatcagtaactgctcctct 67  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  53065548 ccaagagcatagcataacatggtttcaatttatcagtaacagctcctct 53065596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 53356994 - 53356946
Alignment:
Q  73 caggccaagagcatagcataatatggtttcaacttatcagtaacagctc 121  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  53356994 caggcaaagagcatagcataacatggtttcaacctatcagtaacagctc 53356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 53065481 - 53065538
Alignment:
Q  68 attctcaggccaagagcatagcataatatggtttcaacttatcagtaacagctcctct 125  Q
    |||||| ||| ||||||||||||||| ||||| ||||| |||||||||| ||||||||    
T  53065481 attctctggcaaagagcatagcataacatggtctcaacctatcagtaactgctcctct 53065538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 53363566 - 53363537
Alignment:
Q  211 actctttctcatgcttcaagtatgcatgct 240  Q
    ||||||||||||||||||||||||||||||    
T  53363566 actctttctcatgcttcaagtatgcatgct 53363537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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