View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16984_low_4 (Length: 397)

Name: NF16984_low_4
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16984_low_4
NF16984_low_4
[»] chr6 (16 HSPs)
chr6 (1-389)||(31561928-31562322)
chr6 (1-351)||(33263208-33263567)
chr6 (111-333)||(33286235-33286457)
chr6 (3-334)||(33058138-33058476)
chr6 (116-330)||(33305178-33305392)
chr6 (109-333)||(9167454-9167678)
chr6 (174-337)||(33401373-33401536)
chr6 (115-333)||(33359409-33359627)
chr6 (109-320)||(33272489-33272698)
chr6 (145-333)||(33388768-33388953)
chr6 (178-347)||(33643766-33643935)
chr6 (185-335)||(33410703-33410853)
chr6 (1-86)||(33388643-33388734)
chr6 (44-92)||(33359340-33359388)
chr6 (23-84)||(28869610-28869671)
chr6 (110-166)||(33399715-33399771)
[»] chr2 (2 HSPs)
chr2 (109-335)||(17439996-17440223)
chr2 (25-92)||(17440233-17440300)
[»] scaffold1408 (2 HSPs)
scaffold1408 (178-325)||(1385-1532)
scaffold1408 (44-92)||(1275-1323)
[»] scaffold0428 (2 HSPs)
scaffold0428 (178-325)||(7131-7278)
scaffold0428 (44-92)||(7021-7069)
[»] chr4 (11 HSPs)
chr4 (222-350)||(31503284-31503412)
chr4 (235-321)||(31527232-31527318)
chr4 (235-318)||(31478166-31478249)
chr4 (180-337)||(31490957-31491114)
chr4 (264-335)||(31498065-31498136)
chr4 (236-319)||(31149174-31149257)
chr4 (180-319)||(31157992-31158131)
chr4 (260-321)||(31033078-31033139)
chr4 (239-296)||(31484023-31484080)
chr4 (39-92)||(31503568-31503621)
chr4 (52-92)||(31471918-31471958)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 31562322 - 31561928
Alignment:
Q  1 cactcaagattcgggaactctcc------tattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactgtgacatnn 94  Q
    |||||||||||||||||| ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31562322 cactcaagattcgggaacgctccaaaatctattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactgtgacataa 31562223  T
Q  95 nnnnnnnnnnnnnntagagccattactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaataataagataatttacagt 194  Q
                  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31562222 aaaacaaacaaaaatagagccattactttgattaaaagataattgtttctaatttgtttatagttctaagataattagtaataataagataatttacagt 31562123  T
Q  195 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562122 accttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggat 31562023  T
Q  295 attcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgagacgacatttccaccataatttccaaagctgatgatgatg 389  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31562022 attcaagccactcaacatatcttaatttgttcgaaagacaattcgggctttctgagacgacatttccaccataatttccatagctgatgatgatg 31561928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 33263208 - 33263567
Alignment:
Q  1 cactcaagattcgggaactctcc------tattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactgtgacatnn 94  Q
    ||||||||||| |||||||||||      |||||||||| | || |  ||||||||||||||||||||| |||| |||||||| ||||||||||||||      
T  33263208 cactcaagatttgggaactctccaaaatctattatcttttctagctcgatggagtgacttagatccaatgttctcaaattgggcagatactgtgacatga 33263307  T
Q  95 nnnnnnnnnnnnnntagagccattactttgattaaaagataatggtttctaatttgtttatagttctaagataa---atagtaataataagataatttac 191  Q
                  |||||||||||||||||||| |||| ||| ||||| |||||| ||||| ||||||||| |   ||| ||||||||||| ||||||     
T  33263308 ataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttat 33263407  T
Q  192 agtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaag 291  Q
    ||||||||||||||| |||||||||| |||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||    
T  33263408 agtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaag 33263507  T
Q  292 gatattcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgaga 351  Q
    |||||||| |||||||||||||||| |||||||| ||||||||| | |||||| ||||||    
T  33263508 gatattcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgaga 33263567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 111 - 333
Target Start/End: Original strand, 33286235 - 33286457
Alignment:
Q  111 gagccattactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaataataagataatttacagtaccttcttgtttgtcc 210  Q
    ||||||||| |||||||  |||| ||| ||||| |||||||||||| ||||||||| || | | |||||||||||||||| ||||||||||| ||| |||    
T  33286235 gagccattaatttgattttaagagaattgtttcaaatttgtttatatttctaagatgaacatttataataagataatttatagtaccttcttctttctcc 33286334  T
Q  211 atagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaac 310  Q
    |||||||  ||||| |||| ||   ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||  ||||| |||    
T  33286335 atagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactgaac 33286434  T
Q  311 atatcttaatttgttcgaaagac 333  Q
    ||||||||||||||| |||||||    
T  33286435 atatcttaatttgtttgaaagac 33286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 33058138 - 33058476
Alignment:
Q  3 ctcaagattcgggaactctcc------tattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactgtgacatnnnn 96  Q
    |||||||||||||||||||||      |||||||||| | |||||| ||||||||| |||||||||| |||| ||||||||||||||||||||| |        
T  33058138 ctcaagattcgggaactctccaaaatctattatcttttctagatttctggagtgacgtagatccaatgttctcaaattgggaagatactgtgacgtgaaa 33058237  T
Q  97 nnnnnnnnnnnntagagccattactttgattaaaagataatggtttctaatttgtttatagttctaagat---aaatagtaataataagataatttacag 193  Q
                |||  ||||||||||||||  |||| ||| ||||  |||||||||||| |||||||||   ||||| ||||||||| | |||||| ||    
T  33058238 aaccaacaaagttag--ccattactttgattgtaagagaattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatag 33058335  T
Q  194 taccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaagga 293  Q
    ||||||||||||| ||||||||||  ||||| ||||   || ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  33058336 taccttcttgtttttccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaagga 33058435  T
Q  294 tattcaacccactcaacatatcttaatttgttcgaaagaca 334  Q
    |||  || ||| | |||| ||||||||||||||||||||||    
T  33058436 tatctaaaccagtgaacaaatcttaatttgttcgaaagaca 33058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 116 - 330
Target Start/End: Original strand, 33305178 - 33305392
Alignment:
Q  116 attactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaataataagataatttacagtaccttcttgtttgtccatagt 215  Q
    |||||||||| ||  ||||||| ||||| | |||||||||| |||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||    
T  33305178 attactttgactatgagataattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagt 33305277  T
Q  216 tgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatc 315  Q
    ||   |||  |||| |||   |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||  ||| |||||||||     
T  33305278 tgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatatt 33305377  T
Q  316 ttaatttgttcgaaa 330  Q
    |||||||||| ||||    
T  33305378 ttaatttgtttgaaa 33305392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 109 - 333
Target Start/End: Original strand, 9167454 - 9167678
Alignment:
Q  109 tagagccattactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaataataagataatttacagtaccttcttgtttgt 208  Q
    |||||||||||||||||||  |||| ||| ||||| |||||||||||| |||||| |||||  |||||||||||| | |||| |||||||| |||||| |    
T  9167454 tagagccattactttgattgtaagaaaattgtttcgaatttgtttatatttctaaaataaacggtaataataagagagtttatagtacctttttgttttt 9167553  T
Q  209 ccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactca 308  Q
    |||||||||  ||||| |||| |    |||||||| || ||||||||||| || ||||||||| ||||||||||||||||||||||||  |  |||||||    
T  9167554 ccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactca 9167653  T
Q  309 acatatcttaatttgttcgaaagac 333  Q
    | ||||||||||| |||||||||||    
T  9167654 agatatcttaattcgttcgaaagac 9167678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 33401373 - 33401536
Alignment:
Q  174 aataataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttg 273  Q
    |||||||||| |||||| ||||||||||||||| ||||||||||  ||||| |||| | |  ||||||||||||||||||||||| ||||||||||||||    
T  33401373 aataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttg 33401472  T
Q  274 atggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaatt 337  Q
     |||||||||||||||||||||||||  ||| |||||||||||||||| ||| |||||| ||||    
T  33401473 ttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaatt 33401536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 333
Target Start/End: Original strand, 33359409 - 33359627
Alignment:
Q  115 cattactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaataataagataatttacagtaccttcttgtttgtccatag 214  Q
    |||| ||||||||||||||||||  |||  |||| ||||||| |||||| ||||| | ||||||||||| |||||| | ||||||||||||| |||||||    
T  33359409 cattgctttgattaaaagataattattttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccatag 33359508  T
Q  215 ttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatat 314  Q
    |||  ||||||||||| ||  ||||||||||||||||||||||| || || |||||||| ||||||||||| | |||||||| |  |||||| || | ||    
T  33359509 ttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaat 33359608  T
Q  315 cttaatttgttcgaaagac 333  Q
    ||||||  ||| |||||||    
T  33359609 cttaatgcgtttgaaagac 33359627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 33272489 - 33272698
Alignment:
Q  109 tagagccattactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaataataagataatttacag-taccttcttgtttg 207  Q
    |||| ||||||| ||||||  |||| ||| ||||| |||||||||||| |||||||||||| | ||||||||    |||||| || |||||||||||||     
T  33272489 tagaaccattacattgattctaagagaattgtttcaaatttgtttatatttctaagataaacattaataatag---aatttataggtaccttcttgtttt 33272585  T
Q  208 tccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactc 307  Q
    ||||||||||  | |||  |||  ||  |||||||||||||| ||| |||| |||||||||||||| ||| | | |||||||||||||| || |||||||    
T  33272586 tccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactc 33272685  T
Q  308 aacatatcttaat 320  Q
    |||||||||||||    
T  33272686 aacatatcttaat 33272698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 145 - 333
Target Start/End: Original strand, 33388768 - 33388953
Alignment:
Q  145 aatttgtttatagttctaagataaatagtaataataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaa 244  Q
    |||||||||||| |||||||||||| | ||||||| |   ||| || | ||||||||||||  ||||||||||  | |||  |||   |  |||||||||    
T  33388768 aatttgtttatatttctaagataaacattaataatca---aatgtataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaa 33388864  T
Q  245 ttctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagac 333  Q
     |||||||| |||  |||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||| |||| |||||||    
T  33388865 ctctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagac 33388953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 178 - 347
Target Start/End: Complemental strand, 33643935 - 33643766
Alignment:
Q  178 ataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatgg 277  Q
    |||||| |||||| | ||||||||||||| ||||||||||  ||||| ||||  ||  ||||| |||||||||||||| || ||| |||||| |||||||    
T  33643935 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 33643836  T
Q  278 caaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttct 347  Q
    |||| || ||||||||||   |  ||| ||||||||||||||||  || ||||||||| | |||||||||    
T  33643835 caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttct 33643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 335
Target Start/End: Original strand, 33410703 - 33410853
Alignment:
Q  185 aatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatac 284  Q
    |||||| |||||||||||| || ||||||||||  | | ||||||  ||  |||||||||||| ||||||||||  |||||||||||| ||||||| | |    
T  33410703 aatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaattcc 33410802  T
Q  285 ttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaa 335  Q
      ||||||||| |   |||| |||| ||| ||||||||||| |||||||||    
T  33410803 cagaaaggataatgctcccagtcaaaataccttaatttgtttgaaagacaa 33410853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 33388643 - 33388734
Alignment:
Q  1 cactcaagattcgggaactctcc------tattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactg 86  Q
    |||||||||||||||||||||||      || ||||||| | |||||| ||||||| |||||||||||| |||| |||||||||||||||||    
T  33388643 cactcaagattcgggaactctccaaaatctactatcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatactg 33388734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 33359340 - 33359388
Alignment:
Q  44 tggagtgacttagatccaattttcttaaattgggaagatactgtgacat 92  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  33359340 tggagttacttagatccaatgttctcaaattgggaagatactgtgacat 33359388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 28869671 - 28869610
Alignment:
Q  23 ctattatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatac 84  Q
    ||||||||||| | |||||  ||||||||||||||| |||| |||| |||||||||||||||    
T  28869671 ctattatcttttctagattgctggagtgacttagatgcaatgttctcaaattgggaagatac 28869610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 33399715 - 33399771
Alignment:
Q  110 agagccattactttgattaaaagataatggtttctaatttgtttatagttctaagat 166  Q
    |||| |||||||||||||| || | ||| ||||| |||||||||||| |||||||||    
T  33399715 agagacattactttgattataaaagaattgtttcgaatttgtttatatttctaagat 33399771  T

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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 109 - 335
Target Start/End: Complemental strand, 17440223 - 17439996
Alignment:
Q  109 tagagccattactttgattaaaagataatggtttctaatttgtttatagttctaagataaatagtaat-aataagataatttacagtaccttcttgtttg 207  Q
    |||||||||||| ||||||| |||| ||| ||||| |||||||||||| ||| |||||||| | |||| ||||||| ||||||  ||||||||||||||     
T  17440223 tagagccattacattgattataagaaaattgtttcgaatttgtttatatttcaaagataaacattaattaataagagaatttatggtaccttcttgtttt 17440124  T
Q  208 tccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactc 307  Q
    ||||||| |   ||||| |||| |   |||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |  ||||||    
T  17440123 tccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactc 17440024  T
Q  308 aacatatcttaatttgttcgaaagacaa 335  Q
    ||||||||||||||||||||||||||||    
T  17440023 aacatatcttaatttgttcgaaagacaa 17439996  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 17440300 - 17440233
Alignment:
Q  25 attatctttacaagatttatggagtgacttagatccaattttcttaaattgggaagatactgtgacat 92  Q
    ||||||||| | || ||| | |||| ||||||||||||| |||| |||||||||||||||||||||||    
T  17440300 attatcttttctagctttctagagtcacttagatccaatcttctcaaattgggaagatactgtgacat 17440233  T

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Target: scaffold1408 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 325
Target Start/End: Original strand, 1385 - 1532
Alignment:
Q  178 ataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatgg 277  Q
    |||||| |||||| ||||||||||||||| ||||||||||  |||||| ||||||| |||| ||||||||||||||||||   |||||||||||||||||    
T  1385 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 1484  T
Q  278 caaatacttgaaaggatattcaacccactcaacatatcttaatttgtt 325  Q
    || |||||||||||||||| ||  ||| | |||||||| |||||||||    
T  1485 cagatacttgaaaggatatccagtccattgaacatatcgtaatttgtt 1532  T

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Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 1275 - 1323
Alignment:
Q  44 tggagtgacttagatccaattttcttaaattgggaagatactgtgacat 92  Q
    |||||| ||||||||||||| |||| ||||||||||||| |||||||||    
T  1275 tggagtcacttagatccaatcttctcaaattgggaagatgctgtgacat 1323  T

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Target: scaffold0428 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 325
Target Start/End: Original strand, 7131 - 7278
Alignment:
Q  178 ataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatgg 277  Q
    |||||| |||||| ||||||||||||||| ||||||||||  |||||| ||||||| |||| ||||||||||||||||||   |||||||||||||||||    
T  7131 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 7230  T
Q  278 caaatacttgaaaggatattcaacccactcaacatatcttaatttgtt 325  Q
    || |||||||||||||||| ||  ||| | |||||||| |||||||||    
T  7231 cagatacttgaaaggatatccagtccattgaacatatcgtaatttgtt 7278  T

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Target: scaffold0428; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 7021 - 7069
Alignment:
Q  44 tggagtgacttagatccaattttcttaaattgggaagatactgtgacat 92  Q
    |||||| ||||||||||||| |||| ||||||||||||| |||||||||    
T  7021 tggagtcacttagatccaatcttctcaaattgggaagatgctgtgacat 7069  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 31503412 - 31503284
Alignment:
Q  222 atgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 321  Q
    |||||||| |||  ||||||||| || ||||||| ||  || ||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||    
T  31503412 atgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaaatacttgaaaggatattcactccattcaacatatcttaatt 31503313  T
Q  322 tgttcgaaagacaattcgggctttctgag 350  Q
     ||| |||||||||||  ||||| |||||    
T  31503312 cgttagaaagacaattgaggcttcctgag 31503284  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 31527232 - 31527318
Alignment:
Q  235 ccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 321  Q
    |||||||||| || |||||||  ||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31527232 ccaagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt 31527318  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 31478249 - 31478166
Alignment:
Q  235 ccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatctta 318  Q
    ||||||||||||| ||||||| ||  | || |||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  31478249 ccaagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattcactccactcaacatatctta 31478166  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 337
Target Start/End: Complemental strand, 31491114 - 31490957
Alignment:
Q  180 aagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggca 279  Q
    |||| |||||| ||||||||||||| | |||||||||| || |||||||| |   | |||||||||||   ||||||||   | ||| |||||||||| |    
T  31491114 aagagaatttatagtaccttcttgtctttccatagttgtgtgatgctgctacctactaagatcaattcggaaagttcatcaagctgagaacttgatggta 31491015  T
Q  280 aatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaatt 337  Q
    |||||  ||||||||||||| |||| |||| |||||||||||| || |||||| ||||    
T  31491014 aatacaagaaaggatattcatcccattcaagatatcttaatttattagaaagataatt 31490957  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 31498136 - 31498065
Alignment:
Q  264 tgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaa 335  Q
    |||||| ||||||| |||||| ||||||||||||||  |||||||| ||||||||||||||| |||||||||    
T  31498136 tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaa 31498065  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 31149174 - 31149257
Alignment:
Q  236 caagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaa 319  Q
    |||||||||||| ||||||| ||  ||  ||||||||||||||||||||||||||||||||  |  |||||| |||||||||||    
T  31149174 caagatcaattcgacaagttgattaggcagaaaacttgatggcaaatacttgaaaggatatctattccactcgacatatcttaa 31149257  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 31157992 - 31158131
Alignment:
Q  180 aagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggca 279  Q
    |||| |||||| ||||||||||||| | ||||||||||  | | ||||||   |  || ||||||||| ||||||| || ||| ||||||| || |||||    
T  31157992 aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca 31158091  T
Q  280 aatacttgaaaggatattcaacccactcaacatatcttaa 319  Q
    |||||||||||||||||  | ||||||| || ||||||||    
T  31158092 aatacttgaaaggatatctaccccactctacgtatcttaa 31158131  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 31033078 - 31033139
Alignment:
Q  260 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 321  Q
    ||||||||||||||  ||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  31033078 ggggtgaaaacttgtaggcaaatacatgaaaggatattcagtccactcaacatatctcaatt 31033139  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 31484080 - 31484023
Alignment:
Q  239 gatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatat 296  Q
    ||||||||| ||||||| || |||  ||||| |||||||||||||| |||||||||||    
T  31484080 gatcaattcaacaagttgattgggccgaaaatttgatggcaaatacatgaaaggatat 31484023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 31503621 - 31503568
Alignment:
Q  39 atttatggagtgacttagatccaattttcttaaattgggaagatactgtgacat 92  Q
    |||| ||||||| ||||||||||| ||||| |||||| | ||||||||||||||    
T  31503621 atttttggagtggcttagatccaaatttctcaaattgcgcagatactgtgacat 31503568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 31471958 - 31471918
Alignment:
Q  52 cttagatccaattttcttaaattgggaagatactgtgacat 92  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  31471958 cttagatccaaatttctcaaattgggcagatactgtgacat 31471918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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