View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16984_low_5 (Length: 388)
Name: NF16984_low_5
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 47080756 - 47081107
Alignment:
| Q |
20 |
ttaatgcttccttaaattatgctattgtagctgtagcttcagagcaacaacacaacccatgattctaacttttttccactactcttttatttacctcttt |
119 |
Q |
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| T |
47080756 |
ttaatgcttccttaaattatgctattgtagctgtaacttcagagaaacaacacaacccatgattctaacttttttttac----cttttttccactactct |
47080851 |
T |
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| Q |
120 |
tgtataaattgagtagtaccatatcagcctttctttattaattactacatttaactaaccatgtttaattgaactgattacattacaggcttttacagat |
219 |
Q |
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| T |
47080852 |
tttgtaaattgagtagtaccatatcaccctttctttattaattactacatttaactaaccatgtttaattgaactcattacattacaggcttttacagat |
47080951 |
T |
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| Q |
220 |
cagcatctggatttatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagcatttgtgatagaccctccatc |
319 |
Q |
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| T |
47080952 |
cagcatctggatttatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagcatttgtgatagaccctccatc |
47081051 |
T |
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| Q |
320 |
actttttgcatacttgtggaaggtaaataaacacaattcaaaatctatttctagta |
375 |
Q |
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| T |
47081052 |
actttttgcatacttgtggaaggtaaataaacacaattcaaaatctatttctagta |
47081107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 3761845 - 3761742
Alignment:
| Q |
200 |
cattacaggcttttacagatcagcatctggatttatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagca |
299 |
Q |
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| T |
3761845 |
cattacatgcttttacatatcagcatctgaatttatgaacctattatcaggagcaccgaaaattgtgggtcaatactattcagaacagctaagcaaagcg |
3761746 |
T |
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| Q |
300 |
tttg |
303 |
Q |
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|||| |
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| T |
3761745 |
tttg |
3761742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 362
Target Start/End: Original strand, 7516234 - 7516264
Alignment:
| Q |
332 |
cttgtggaaggtaaataaacacaattcaaaa |
362 |
Q |
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| T |
7516234 |
cttgtggaaggtaaataaacacaattcaaaa |
7516264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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