View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16984_low_6 (Length: 359)
Name: NF16984_low_6
Description: NF16984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16984_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 1614893 - 1615227
Alignment:
| Q |
1 |
caagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaac |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1614893 |
caagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaac |
1614992 |
T |
|
| Q |
101 |
aatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1614993 |
aatacaaacagccggttaaaaagacaatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaataaaaccgatacggtg |
1615091 |
T |
|
| Q |
201 |
cagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacatt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615092 |
cagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacatt |
1615186 |
T |
|
| Q |
301 |
agtccacatgtagaaaaccagctctaaattatgcagaaaat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615187 |
agtccacatgtagaaaaccagctctaaattatgcagaaaat |
1615227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 24456199 - 24455866
Alignment:
| Q |
1 |
caagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24456199 |
caagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaactaacaggagaac |
24456100 |
T |
|
| Q |
101 |
aatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaaccgatacggt |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
24456099 |
aatacaaacagccagttaaaaagacaata-atttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaaccgatatg-- |
24456003 |
T |
|
| Q |
200 |
gcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacat |
299 |
Q |
| |
|
||||||||| | | | ||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
24456002 |
---gtgcagctggacc--acagagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacat |
24455908 |
T |
|
| Q |
300 |
tagtccacatgtagaaaaccagctctaaattatgcagaaaat |
341 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24455907 |
tagtccacatgccgaaaaccagctctaaattatgcagaaaat |
24455866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 43228434 - 43228102
Alignment:
| Q |
1 |
caagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaac |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
43228434 |
caagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagcaacaggagacc |
43228335 |
T |
|
| Q |
101 |
aatacaaacagccggttaaaaagacaatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtg |
200 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| | |
|
|
| T |
43228334 |
aatacaaacagccagttaaaaagacagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatg--- |
43228239 |
T |
|
| Q |
201 |
cagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacatt |
300 |
Q |
| |
|
|||||||| ||| | ||||| |||||||||| | |||| ||||||| ||||| | ||| ||||||| | | |||||||||||||||||||||||| |
|
|
| T |
43228238 |
--ttgcagctggaac--acagagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacatt |
43228143 |
T |
|
| Q |
301 |
agtccacatgtagaaaaccagctctaaattatgcagaaaat |
341 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
43228142 |
agtccacatgccgaaagccaactctaaattatgcagaaaat |
43228102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 333
Target Start/End: Complemental strand, 14839323 - 14839144
Alignment:
| Q |
147 |
agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa |
246 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| | |||| |||||||||| |||| ||| |
|
|
| T |
14839323 |
agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa |
14839231 |
T |
|
| Q |
247 |
aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
333 |
Q |
| |
|
|||| || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
14839230 |
aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatg |
14839144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 139 - 335
Target Start/End: Original strand, 49234306 - 49234497
Alignment:
| Q |
139 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||||||||| |
|
|
| T |
49234306 |
gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca |
49234400 |
T |
|
| Q |
239 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgca |
335 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
49234401 |
gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgca |
49234497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 49233735 - 49233932
Alignment:
| Q |
139 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
238 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||| ||||| |
|
|
| T |
49233735 |
gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca |
49233829 |
T |
|
| Q |
239 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa |
338 |
Q |
| |
|
|||| |||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49233830 |
gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa |
49233929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 50862741 - 50862545
Alignment:
| Q |
139 |
gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg |
238 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||| | |||||| || |||| ||| ||| |||||||||||| |
|
|
| T |
50862741 |
gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca |
50862648 |
T |
|
| Q |
239 |
gggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa |
338 |
Q |
| |
|
|||| ||||||| ||||||| || |||||||| ||||||| || ||||| | ||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
50862647 |
gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa |
50862548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 333
Target Start/End: Original strand, 27962367 - 27962546
Alignment:
| Q |
147 |
agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa |
246 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| | |||| |||||||||| |||| ||| |
|
|
| T |
27962367 |
agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa |
27962459 |
T |
|
| Q |
247 |
aaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
333 |
Q |
| |
|
|||| || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
27962460 |
aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatg |
27962546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University