View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16985_low_1 (Length: 480)
Name: NF16985_low_1
Description: NF16985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16985_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6410717 - 6410944
Alignment:
| Q |
1 |
gtttattcttcactaatgagaatggttgcctcttgcaatggtatcctttgtttaaacctaataaacgattatagcactgaaaccaaactttattcacttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6410717 |
gtttattcttcacttatgagaatggttgcctcttgcgatggtatcctttgtttaaacctaataaacgattatagcactgaaaccaaactttattcacttt |
6410816 |
T |
|
| Q |
101 |
gttttgtgggattgcttgtgcatccttgctggatttgttggtttccgatatttgtgcattaaattcaactgcaactttatgtcaaacttcggttcctgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6410817 |
gttttgtgggattgcttgtgcatccttgctggatttgttggtttccgatatttgtgcattaaattcaactgcaactttatgtcaaacttcggttcctgtt |
6410916 |
T |
|
| Q |
201 |
atgttttgtatgtttttactttatcaat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6410917 |
atgttttgtatgtttttactttatcaat |
6410944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 257 - 462
Target Start/End: Original strand, 6410941 - 6411146
Alignment:
| Q |
257 |
caatcgatatgtccaacatggaaaactgttgtgtttgtttcatttatctgtttgttaaagttatttgttccttcgttgtgcattacattttctacaacct |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6410941 |
caatcgatatgtccaacatggaaaactgttgtgtttgtttcatttatctgtttgttagagttatttgttccttcgttgtgcattacattttatacaacct |
6411040 |
T |
|
| Q |
357 |
acaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgtttactaactcaatactatgtttgttagcgtatc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6411041 |
acaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgtttactaactcaatattatgtttgttagcgtatc |
6411140 |
T |
|
| Q |
457 |
tgctac |
462 |
Q |
| |
|
|||||| |
|
|
| T |
6411141 |
tgctac |
6411146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 150 - 457
Target Start/End: Complemental strand, 9819588 - 9819279
Alignment:
| Q |
150 |
atttgtgcattaaattcaactgcaactttatgtcaaacttcggttcctgttatgttttgtatgtttttactttatcaatagcatcttaatggatcgttgt |
249 |
Q |
| |
|
|||||||| ||| ||||||||||||| | ||||||||||||||||| || | ||| | ||||||||| || |||||| | | | ||||||||| |||| |
|
|
| T |
9819588 |
atttgtgctttatattcaactgcaacatcatgtcaaacttcggttcatgctgtgtatattatgtttttcctg-atcaatggtaacgtaatggatcattgt |
9819490 |
T |
|
| Q |
250 |
taattaccaatcgat---atgtccaacatggaaaactgttgtgtttgtttcatttatctgtttgttaaagttatttgttccttcgttgtgcattacattt |
346 |
Q |
| |
|
||||||| || ||| || | ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
9819489 |
taattactgattgatggaatatacaacatgaaaaactgttgtgtttgtttcatttatctgtttgttaaagtcgttggttcctttgttgtgcattacattt |
9819390 |
T |
|
| Q |
347 |
tctacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgtttactaactcaatactatgtttg |
446 |
Q |
| |
|
| |||| | || | |||||||||| |||||||| ||| |||||||||||| ||||||||||| |||||| ||||| | | | |||||| ||||||| |
|
|
| T |
9819389 |
tatacagtccacgaccatgcattgcgctagatggttagttgtttggttttctgagattggaataagtattttgatgtatgcctagtcaatagtatgtttt |
9819290 |
T |
|
| Q |
447 |
ttagcgtatct |
457 |
Q |
| |
|
||||| ||||| |
|
|
| T |
9819289 |
ttagcatatct |
9819279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 270 - 462
Target Start/End: Complemental strand, 4967914 - 4967721
Alignment:
| Q |
270 |
caacatggaaaactgttgtgtttgtttcatttatctgtttgttaaagttatttgttccttcgttgtgcattacattttctacaacc---tacaatcatgc |
366 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||||| |||| || ||| |||| |||||||||||||||| ||||||| | |||||| | |
|
|
| T |
4967914 |
caacatgaaaaactgttgt--ttgtttcatttatctgcttgttagagttgttggttacttcattgtgcattacattttatacaacccataataatcatac |
4967817 |
T |
|
| Q |
367 |
attgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgtttactaactcaatactatgtttgttagcgtatctgctac |
462 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||||| ||||| |||||| ||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
4967816 |
tttgcattaggtggttagtggattggttttctaagattggaataagtattcagatgtatacccagtcaatagtatgtttgttagcatatctgctac |
4967721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University