View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16985_low_2 (Length: 302)

Name: NF16985_low_2
Description: NF16985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16985_low_2
NF16985_low_2
[»] chr4 (5 HSPs)
chr4 (1-238)||(27637555-27637792)
chr4 (1-238)||(37353748-37353985)
chr4 (1-238)||(37365722-37365959)
chr4 (1-171)||(12292496-12292669)
chr4 (1-220)||(12242707-12242929)
[»] chr2 (3 HSPs)
chr2 (4-238)||(34697799-34698036)
chr2 (4-238)||(34720211-34720448)
chr2 (1-80)||(27909928-27910007)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27637555 - 27637792
Alignment:
Q  1 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637555 tgaatctcgataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 27637654  T
Q  101 ataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27637655 ataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact 27637754  T
Q  201 tgattccgcgtcattttccaccaacatccttactctct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27637755 tgattccgcgtcattttccaccaacatccttactctct 27637792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37353748 - 37353985
Alignment:
Q  1 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37353748 tgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggaagaa 37353847  T
Q  101 ataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact 200  Q
     ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |||||||||||||| ||||||||    
T  37353848 ctaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctcttacttcttccttttctccacaact 37353947  T
Q  201 tgattccgcgtcattttccaccaacatccttactctct 238  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  37353948 tgattccgcatcattttccaccaacatcgttactctct 37353985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37365722 - 37365959
Alignment:
Q  1 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37365722 tgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggaagaa 37365821  T
Q  101 ataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact 200  Q
     ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |||||||||||||| ||||||||    
T  37365822 ctaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctcttacttcttccttttctccacaact 37365921  T
Q  201 tgattccgcgtcattttccaccaacatccttactctct 238  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  37365922 tgattccgcatcattttccaccaacatcgttactctct 37365959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 12292669 - 12292496
Alignment:
Q  1 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 100  Q
    ||||||||||||| ||||||||||  ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| |||||||||||||| | ||    
T  12292669 tgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcctacatggtataa 12292570  T
Q  101 ataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttca 171  Q
    |||||||| |    | |||||| |||||||||| ||||||||    ||||||| ||||||| ||||||||||||    
T  12292569 ataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttca 12292496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12242929 - 12242707
Alignment:
Q  1 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa 100  Q
    ||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| |||||||||||||    
T  12242929 tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa 12242830  T
Q  101 ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca 197  Q
    |||||||| |   || | |||| ||||| |||| |||||||   | ||||||| ||||||| ||||| ||||||  ||| || || || |||||||| ||    
T  12242829 ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca 12242730  T
Q  198 acttgattccgcgtcattttcca 220  Q
    || ||| |  || ||||||||||    
T  12242729 acatgagtttgcatcattttcca 12242707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 34697799 - 34698036
Alignment:
Q  4 atctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaaata 103  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||| |||| |||||||||||||| |||||||    
T  34697799 atctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcctacatggaagaaata 34697898  T
Q  104 agacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact 200  Q
    ||||||||| |  ||||||||||||||||||||||||   || |||||  || | ||| |  ||||||||||||||  |||||||  ||||||| ||||     
T  34697899 agacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttcactttcaccgcaaca 34697998  T
Q  201 tgattccgcgtcattttccaccaacatccttactctct 238  Q
    ||||||||||||||||  ||| | ||||||| ||||||    
T  34697999 tgattccgcgtcatttagcacaaccatccttgctctct 34698036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 34720211 - 34720448
Alignment:
Q  4 atctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaaata 103  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||  ||||||| |||| |||||||||||||| |||||||    
T  34720211 atctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcctacatggaagaaata 34720310  T
Q  104 agacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact 200  Q
    ||||||||| |  ||||||||||||||||||||||||   || |||||  || | ||| |  ||||||||||||||  |||||||  ||||||| ||||     
T  34720311 agacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttcactttcaccgcaaca 34720410  T
Q  201 tgattccgcgtcattttccaccaacatccttactctct 238  Q
    ||||||||||||||||  ||| | ||||||| ||||||    
T  34720411 tgattccgcgtcatttagcacaaccatccttgctctct 34720448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27909928 - 27910007
Alignment:
Q  1 tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga 80  Q
    ||||||||||||| | |||||||| |||||||||| |||||||||  || ||||||||| | |||  |||||||||||||    
T  27909928 tgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga 27910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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