View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_high_1 (Length: 740)
Name: NF16986_high_1
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 680; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 20 - 719
Target Start/End: Original strand, 5893633 - 5894332
Alignment:
| Q |
20 |
ttgcagtcattgatatttgctggaacagaaacctctgctacaacattagaatgggctatgtctaatttgttaaaccatccagaggtagtagaaaaagcaa |
119 |
Q |
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| T |
5893633 |
ttgcagtcattgatatttgctggaacagaaacctctgctacaacattagaatgggctatgtctaatttgttaaaccatccagaggtagtagaaaaagaaa |
5893732 |
T |
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| Q |
120 |
agattgaattggataatcacattggacaagagcacttaattgaggaaattgaagctaccaaattaaagtaccttcaaaatattatctctgagactttacg |
219 |
Q |
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| T |
5893733 |
agattgaattggataatcacattggacaagagcacttaattgaggaagttgaagctaccaaattaaagtaccttcaaaatattatctctgagactttacg |
5893832 |
T |
|
| Q |
220 |
gttgcatccagcagcaccaatgttgttaccacatttatcatctaaagcttgcactgtgggaggctatgatgtgcctcaaaacaccatgttgatggtgaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5893833 |
gttgcatccagcagcaccaatgttgttaccacatttatcaactaaagcttgcactgtaggaggctatgatgtgcctcaaaacaccatgttgatggtgaat |
5893932 |
T |
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| Q |
320 |
gcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgaggatggtcatcaaggagacaaacatgggttta |
419 |
Q |
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| T |
5893933 |
gcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgaggatggtcatcaaggagacaaacatgggttta |
5894032 |
T |
|
| Q |
420 |
ttccttttgggatggggaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgactttgggatctttgattcaatgctttgaatggaa |
519 |
Q |
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| T |
5894033 |
ttccttttgggatggggaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgactttgggatctttgattcaatgctttgaatggaa |
5894132 |
T |
|
| Q |
520 |
aagtattggcaaggaaggagttgatatgactgaaggacgtggaactctgttgcctatggccattccattggaggcacaatgcaaagctcgtccaataatc |
619 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894133 |
aaggattggcaaggaaggagttgatatgactgaaggacgtggaactctgttgcctatggccattccattggaggcacaatgcaaagctcgtccaataatc |
5894232 |
T |
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| Q |
620 |
aataagcttttctcttaataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataatgttgtagaagttgaaaaaatattatttggtgt |
719 |
Q |
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| T |
5894233 |
aataagcttttctcttaataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataatgttgtagaagttgaaaaaatattatttggtgt |
5894332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 5886186 - 5886278
Alignment:
| Q |
296 |
caaaacaccatgttgatggtgaatgcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgag |
388 |
Q |
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| T |
5886186 |
caaaacacaattttgatggtgaatgcttgggtcattcatagagatccaaatttgtggagtgatcctacttgttttaagccagagaggtttgag |
5886278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 14946168 - 14946205
Alignment:
| Q |
65 |
ttagaatgggctatgtctaatttgttaaaccatccaga |
102 |
Q |
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| T |
14946168 |
ttagaatgggcaatgtctaatttattaaaccatccaga |
14946205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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