View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16986_high_12 (Length: 278)
Name: NF16986_high_12
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 45670866 - 45671117
Alignment:
| Q |
17 |
caaacacgagatcatcataacaacataaaatgtcaactttgatgaagcagacctattggtagcttattattg-----aaatgaacttgtaattcacatag |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45670866 |
caaacacgagatcatcataacaacgtaaaatgtcaactttgatgaagcagacctattgatagcttattattgaattgaaatgaacttgtaattcacatag |
45670965 |
T |
|
| Q |
112 |
acttgtaagatactgttggttgtacatacagcctaattaacacatttcaactaggcattgaagttgtttgccacaaatgctgctgctatcagaagaaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45670966 |
acttgtaagatactgttggttgtacatacagcctaattaacacatttcaactaggcattgaagttgtttgccacaaatgctgctgctatcagaagaaaaa |
45671065 |
T |
|
| Q |
212 |
attatgacaaataattaaagtgctacacatactaccttaccccctctaatat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45671066 |
attatgacaaataattaaagtgctacacatgctaccttaccccctctaatat |
45671117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University