View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_high_2 (Length: 557)
Name: NF16986_high_2
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 24 - 541
Target Start/End: Original strand, 11297475 - 11297994
Alignment:
| Q |
24 |
taacgtacgtgcaaaatcatctataataactctcggttaacgtaatgtgtcaaactcgacaaattaatgataacagattcatttataaatcacaaatcaa |
123 |
Q |
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| T |
11297475 |
taacgtacgtgcaaaattatctataataactctcggttagcgtaatgtatcaaactcgacaaattaatgataacagattcatttataaatcacaaatcaa |
11297574 |
T |
|
| Q |
124 |
cacttctaagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattgtcaaaatcacattaacatagtaatttgtctatgattgcca |
223 |
Q |
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| T |
11297575 |
cacttc-aagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattgccaaaatcacattaacatagtaatttgtctatgattgcca |
11297673 |
T |
|
| Q |
224 |
atgtttcgaatgctatggtaatgctaatgttttcttatcgatcataaatttcttagcgtgaacacaatcattaataatcacattaattaagtgcaatttt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11297674 |
atgtttcgaatgctatggtaatgctaatgttttcttatcgatcataaatttcttagcgtgaacacaatcattaattatcacattaattaagtgcaatttt |
11297773 |
T |
|
| Q |
324 |
gtcttcaacttaatttgttttagcctataaaaactgttcctatggatgagcataagcataattaactacattgtc---atggccagcagcaaagtagtta |
420 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11297774 |
gtctacaacttaatttgttttagcctataaaaactgttcctatggatgagcataagcataattaactacattgtcaatatggccagcagcaaagtagtta |
11297873 |
T |
|
| Q |
421 |
atcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcaccatcgtctctagttaacaatga |
520 |
Q |
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| T |
11297874 |
atcttttatcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcaccatcgtctctagttaacaatga |
11297973 |
T |
|
| Q |
521 |
tgatggtgtctgcaagagtat |
541 |
Q |
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| T |
11297974 |
tgatggtgtctgcaagagtat |
11297994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 306 - 541
Target Start/End: Original strand, 11292399 - 11292641
Alignment:
| Q |
306 |
ttaattaagtgcaattttgtcttcaacttaatt----tgttttagcctataaaaactgttcctatggatgagcataagcataattaactacattgtca-- |
399 |
Q |
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| T |
11292399 |
ttaattaaatgcaattttgtcttcaacttaattaatttgttttagcctataaaaactgttcctatggatgagcataaacataattaaccacattgtcaat |
11292498 |
T |
|
| Q |
400 |
-tggccagcagcaaagtagttaatcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcac |
498 |
Q |
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| T |
11292499 |
atggccaggaggaaagtagttaatcttttctcaattgtcatgctttgcattacaatagtacaaggaagaaaaaccataaacactagtaatgaattttcag |
11292598 |
T |
|
| Q |
499 |
catcgtctctagttaacaatgatgatggtgtctgcaagagtat |
541 |
Q |
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| T |
11292599 |
catcgtctctagataacaatgacgatggtatctgcaagagtat |
11292641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 11292093 - 11292227
Alignment:
| Q |
56 |
tcggttaacgtaatgtgtcaaactcgacaaa-ttaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaata |
154 |
Q |
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| T |
11292093 |
tcggttagtgtaatgtctcaaactcaacaaaattaatgttaacaaattcaattataaatcacaatttaacacttc-aagaacaaactccaactagtaaga |
11292191 |
T |
|
| Q |
155 |
tagcatacgagttacgtcaacctaaattgtcaaaat |
190 |
Q |
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|||| || |||||||||||| | |||||| |||||| |
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| T |
11292192 |
tagcctaggagttacgtcaatccaaattgccaaaat |
11292227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 304
Target Start/End: Original strand, 11292258 - 11292374
Alignment:
| Q |
188 |
aatcacattaacatagtaatttgtctatgattgccaatgtttcgaatgctatggtaatgctaatgttttcttatcgatcataaatttcttagcgtgaaca |
287 |
Q |
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|||||||||||| |||||||||| ||| || || | |||||||||| ||| |||||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
11292258 |
aatcacattaacttagtaatttgcctaagaatgtcgatgtttcgaacgctcaggtaatctcaatgttttgttattgatcataaatttcttagcgtgaaca |
11292357 |
T |
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| Q |
288 |
caatcattaataatcac |
304 |
Q |
| |
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||| |||||||||||| |
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| T |
11292358 |
caactattaataatcac |
11292374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 399 - 541
Target Start/End: Original strand, 30909459 - 30909601
Alignment:
| Q |
399 |
atggccagcagcaaagtagttaatcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcac |
498 |
Q |
| |
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||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||| |
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| T |
30909459 |
atggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaaagcacttaacactaacaatgaattttcag |
30909558 |
T |
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| Q |
499 |
catcgtctctagttaacaatgatgatggtgtctgcaagagtat |
541 |
Q |
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| T |
30909559 |
catcgtctctagttaacaacgatgatggcatctgcaaaagtat |
30909601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 524
Target Start/End: Original strand, 30902969 - 30903122
Alignment:
| Q |
374 |
cataagcataattaactacattgtca---tggccagcagcaaagtagttaatcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaa |
470 |
Q |
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|||||||| ||||||| ||||||||| ||||||||| | | |||||| ||| ||||||| |||||| ||||||||||| ||| ||||||||||||| |
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| T |
30902969 |
cataagcaaaattaaccacattgtcaacatggccagcacaatactagttagtctaatctcaatagtcttgttttgcattacagtagcacaaggaagaaaa |
30903068 |
T |
|
| Q |
471 |
acacttaacactagcattgaattttcaccatcgtctctagttaacaatgatgat |
524 |
Q |
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| T |
30903069 |
acacttcacacaaccaatgaaatttcagcatcctctctagttaccgatgatgat |
30903122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 30909041 - 30909147
Alignment:
| Q |
84 |
aaattaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattg |
183 |
Q |
| |
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||||||||| | ||| |||||||||||||||||||||||||||||| | || |||| |||||||||| ||| | || |||||||||||||| |||||| |
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| T |
30909041 |
aaattaatgttgacacattcatttataaatcacaaatcaacacttcaagaaaaaaaccacaactagtaagataacctaggagttacgtcaacccaaattg |
30909140 |
T |
|
| Q |
184 |
tcaaaat |
190 |
Q |
| |
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|||||| |
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| T |
30909141 |
ccaaaat |
30909147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 30909188 - 30909246
Alignment:
| Q |
188 |
aatcacattaacatagtaatttgtctatgattgccaatgtttcgaatgctatggtaatg |
246 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||||| ||| ||||||| |
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|
| T |
30909188 |
aatcacattaacatagtaatttacctatgaatgtcaatgtttcgaacgctcaggtaatg |
30909246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 36706423 - 36706364
Alignment:
| Q |
422 |
tcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacac |
481 |
Q |
| |
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|||| ||||| | ||||||||||||||||||| | ||||||||||||||||||| |||| |
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|
| T |
36706423 |
tcttatctcattagtcttgctttgcattacaacaacacaaggaagaaaaacactttacac |
36706364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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