View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_high_3 (Length: 496)
Name: NF16986_high_3
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_high_3 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 240 - 496
Target Start/End: Original strand, 37362191 - 37362447
Alignment:
| Q |
240 |
gatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggtggaagtg |
339 |
Q |
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| T |
37362191 |
gatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggtggaagtg |
37362290 |
T |
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| Q |
340 |
aagttaccttaacatcaagaagtccaagtgcgaaagcactccctttctcaacctcatgttcaaacggtgacagctcctgaacagagttgtttacagccag |
439 |
Q |
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| T |
37362291 |
aagttaccttaacatcaagaagtccaagtgcgaaagcgctccctttctcaacctcatgttcaaacggtaacagctcctcaacagaattgttttcagccgg |
37362390 |
T |
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| Q |
440 |
cgattgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
496 |
Q |
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| T |
37362391 |
cgattgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatgggg |
37362447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 684184 - 684256
Alignment:
| Q |
334 |
gaagtgaagttaccttaacatcaagaagtccaagtgcgaaagcactccctttctcaacctcatgttcaaacgg |
406 |
Q |
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| T |
684184 |
gaagtgaaattaccttgacagcaagaagtccaagcgcgaaagcactccctttctcaacctcatgttcaaacgg |
684256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 7135603 - 7135542
Alignment:
| Q |
264 |
aaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagag |
325 |
Q |
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| T |
7135603 |
aaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagag |
7135542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 41810456 - 41810404
Alignment:
| Q |
443 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
496 |
Q |
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| T |
41810456 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgggg |
41810404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 31770859 - 31770911
Alignment:
| Q |
443 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
496 |
Q |
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| T |
31770859 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgggg |
31770911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 14184932 - 14184882
Alignment:
| Q |
443 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgg |
494 |
Q |
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| T |
14184932 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgg |
14184882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 17831549 - 17831490
Alignment:
| Q |
263 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
322 |
Q |
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| T |
17831549 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
17831490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 52131054 - 52131002
Alignment:
| Q |
443 |
ttgaagatgtttaatcaaaatgtgacagagcgagaagaagagggaagcatgggg |
496 |
Q |
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| T |
52131054 |
ttgatgatgtataatcaaaa-gtgacagagggagaagaagagggaagcatgggg |
52131002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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