View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_low_10 (Length: 319)
Name: NF16986_low_10
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 7915113 - 7914810
Alignment:
| Q |
1 |
gagttcgacacattccctacatcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcg |
100 |
Q |
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| T |
7915113 |
gagtttgacacatttccaacatcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcg |
7915014 |
T |
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| Q |
101 |
acatagctacacaaggggagaggtttatgtctctactgagctggagagaccctagaggaactacattgtttgtgttgtttagcctttgtgcagctgtgat |
200 |
Q |
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| T |
7915013 |
acatagctacacaaggggagaggtttatgtctctactgagctggagagaccctagaggaactacactgtttgtgttgtttagcctttgtgcagctgtgat |
7914914 |
T |
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| Q |
201 |
tttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaat |
300 |
Q |
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| T |
7914913 |
tttctatgcaacaccatttagagttgtggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaat |
7914814 |
T |
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| Q |
301 |
ttct |
304 |
Q |
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|||| |
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| T |
7914813 |
ttct |
7914810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 7834190 - 7834489
Alignment:
| Q |
1 |
gagttcgacacattccctacatcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcg |
100 |
Q |
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| T |
7834190 |
gagtttgacacatttccaacatcaagatcgcatgatgcagtgagaatgaggtatgataggctaagaactgttgcaggtaggattcaagcaattgttggtg |
7834289 |
T |
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| Q |
101 |
acatagctacacaaggggagaggtttatgtctctactgagctggagagaccctagaggaactacattgtttgtgttgtttagcctttgtgcagctgtgat |
200 |
Q |
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| T |
7834290 |
acatagctatacaaggggagaggtttgtgtctctactgagctggagagacactagaggaactacactgtttatgttgtttagcctttgtgcagctgtgat |
7834389 |
T |
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| Q |
201 |
tttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaat |
300 |
Q |
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| T |
7834390 |
tttctatgcaacaccatttagagttgtggttttagtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgtatcgagtaat |
7834489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 7880207 - 7880109
Alignment:
| Q |
167 |
tgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataatttgagacatccaa |
265 |
Q |
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| T |
7880207 |
tgtttgtgttgtttagtctttgtgaagttgtgattttctatgcaactccatttagagttgtggttttggtgacaggtttgtataatttaagacatccaa |
7880109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7880307 - 7880221
Alignment:
| Q |
1 |
gagttcgacacattccctacatcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaa |
87 |
Q |
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| T |
7880307 |
gagtttgacacatttccaacatcaagatcacatgatgcagtgagaatgaggtatgatagacttaaaaccgttgcagataggattcaa |
7880221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 7832708 - 7832631
Alignment:
| Q |
227 |
tggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttct |
304 |
Q |
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| T |
7832708 |
tggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaatttct |
7832631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 8415521 - 8415403
Alignment:
| Q |
31 |
catgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagaggtttatgt |
130 |
Q |
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| T |
8415521 |
catgatgtggtgagaatgaggtatgataggcttagaagtgttgcgggaaggattcaaacggttgttggagacatagctacacaaggagagaggtttcatt |
8415422 |
T |
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| Q |
131 |
ctctactgagctggagaga |
149 |
Q |
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| T |
8415421 |
ctctactgagctggagaga |
8415403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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