View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16986_low_12 (Length: 303)

Name: NF16986_low_12
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16986_low_12
NF16986_low_12
[»] chr1 (10 HSPs)
chr1 (177-303)||(7104313-7104439)
chr1 (174-244)||(15321086-15321156)
chr1 (177-230)||(7104218-7104271)
chr1 (181-257)||(49897922-49897998)
chr1 (177-264)||(3232176-3232263)
chr1 (185-246)||(52432889-52432950)
chr1 (177-257)||(67974-68054)
chr1 (174-258)||(3367827-3367911)
chr1 (186-267)||(11426697-11426777)
chr1 (175-243)||(28668344-28668412)
[»] chr6 (2 HSPs)
chr6 (4-242)||(7716716-7716952)
chr6 (201-264)||(26236756-26236819)
[»] chr4 (1 HSPs)
chr4 (177-264)||(22050900-22050987)
[»] chr2 (6 HSPs)
chr2 (172-245)||(34176747-34176820)
chr2 (177-245)||(16576296-16576364)
chr2 (177-264)||(17606568-17606655)
chr2 (181-264)||(35370450-35370532)
chr2 (177-259)||(38576882-38576964)
chr2 (180-242)||(9931331-9931393)
[»] chr8 (9 HSPs)
chr8 (184-244)||(29969152-29969212)
chr8 (180-264)||(32166741-32166825)
chr8 (177-231)||(32166608-32166662)
chr8 (177-238)||(29093584-29093645)
chr8 (174-239)||(40700891-40700956)
chr8 (174-264)||(35574749-35574839)
chr8 (216-264)||(12782463-12782511)
chr8 (174-234)||(35574610-35574670)
chr8 (174-218)||(42927590-42927634)
[»] chr5 (7 HSPs)
chr5 (177-245)||(22780303-22780371)
chr5 (177-264)||(40483729-40483816)
chr5 (178-244)||(14138594-14138660)
chr5 (174-251)||(7215421-7215498)
chr5 (177-259)||(2243261-2243343)
chr5 (186-251)||(41264430-41264496)
chr5 (177-237)||(17739914-17739974)
[»] chr3 (1 HSPs)
chr3 (175-243)||(2562967-2563035)
[»] chr7 (7 HSPs)
chr7 (172-210)||(29152482-29152520)
chr7 (186-264)||(31152841-31152919)
chr7 (186-264)||(31171402-31171480)
chr7 (174-244)||(32962351-32962421)
chr7 (181-242)||(23944128-23944189)
chr7 (174-259)||(33362358-33362442)
chr7 (172-244)||(32138846-32138918)
[»] scaffold0136 (1 HSPs)
scaffold0136 (177-237)||(36940-37000)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 7104313 - 7104439
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaattaatgatatagac 276  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104313 ttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaattaatgatatagac 7104412  T
Q  277 ctgattgattttttcttacgaacatca 303  Q
    |||||||||||||||||||||||||||    
T  7104413 ctgattgattttttcttacgaacatca 7104439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 15321086 - 15321156
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatta 244  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||||| ||||||| |||||||||    
T  15321086 tttttcatatccttcattcaacatgtaatcttcatctctttcatttcagaatcaaatcataattgtcatta 15321156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 7104218 - 7104271
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaat 230  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  7104218 ttcatctccttcatgcaacatgtaatattcatctctttcgtttcagaatcgaat 7104271  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 49897922 - 49897998
Alignment:
Q  181 tctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacc 257  Q
    ||||||||||||||||||| || | |||||| ||||||  |||||||||||||| ||||||||||| |||| |||||    
T  49897922 tctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 3232176 - 3232263
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||| |||||||||||||||||| | |||||||||  ||  || |||||||||||||| |||||||| |||| || |||| ||||    
T  3232176 ttcatcttcttcattcaacatgtaatctccatctctttacttctagtatcgaatcatacttatcattagaggtaaattgcccctaatt 3232263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 52432889 - 52432950
Alignment:
Q  185 cttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattaga 246  Q
    |||||||| ||||||||| || |||||||| |||||| |||| ||||||| |||||||||||    
T  52432889 cttcattcgacatgtaatttttatctctttcgtttcataatcaaatcatatttgtcattaga 52432950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 67974 - 68054
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacc 257  Q
    ||||| |||||||||| |||||| || |||||||||||  || || ||||| |||||| ||||||||||| |||| |||||    
T  67974 ttcatatccttcattctacatgtgatcttcatctctttcattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 3367827 - 3367911
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttaccc 258  Q
    ||||||||||| |||||||||||||| || | ||||||||| ||| ||||||   |||||| || |||||| |||||| ||||||    
T  3367827 tttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcattaaaagtaaattaccc 3367911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 11426777 - 11426697
Alignment:
Q  186 ttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaattaat 267  Q
    ||||||| ||||||||  || ||||||||||||  |||||  ||||||| ||||||||||  |||| |||||||||||||||    
T  11426777 ttcattcgacatgtaaactttatctcttttgttcgagaatttaatcatagttgtcattag-ggtaaattacccccaattaat 11426697  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 28668344 - 28668412
Alignment:
Q  175 ttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatt 243  Q
    |||||||||  ||| |||||||||| || |||| || |||||||||| ||||| ||| |||||||||||    
T  28668344 ttttcatctatttcgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgtcatt 28668412  T

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Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 7716952 - 7716716
Alignment:
Q  4 ggtagattattcttgccaatttaaaatcagttattataattatttttaaaatctgttaccataatcgacttttatttgtcattagcgctaaattaccttt 103  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||     
T  7716952 ggtagtttattcttgctaatttaaaataagttattataattatttttaaaatcagttactataatcgacttctatttgtcattagtgctaaattaccttc 7716853  T
Q  104 aatttatcacagataatatattttggttttttcatacactcagttatcattttcatctnnnnnnntccaatttttcatctccttcattcaacatgtaata 203  Q
    ||||||||||  |||||||||||||||||||||||| | || ||||||||||| ||||       |  | |||||||| ||||||||||||||||||||     
T  7716852 aatttatcacgaataatatattttggttttttcataaattcggttatcatttttatctaaaaatct-aactttttcatttccttcattcaacatgtaatt 7716754  T
Q  204 ttcatctcttttgtttcagaatcgaatcatacttgtcat 242  Q
    |||||||| || |||| ||||| || || ||||||||||    
T  7716753 ttcatctcattcgttttagaatagattc-tacttgtcat 7716716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 26236819 - 26236756
Alignment:
Q  201 atattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||| |||| ||||||||||||    
T  26236819 atattcatctcttttgttttagaatcgaatcatacttattattagaggtaaattacccccaatt 26236756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 22050900 - 22050987
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||||||||||||||||||| || |||||||| ||  |||||||||||||||||| || ||||||   |||| ||||||||||||    
T  22050900 ttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcattaagggtaaattacccccaatt 22050987  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 34176747 - 34176820
Alignment:
Q  172 aatttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattag 245  Q
    |||| ||||||||||||||| ||||| | || ||||||||||| |||||| |||||||||||| || |||||||    
T  34176747 aattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatcatatttttcattag 34176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 16576296 - 16576364
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattag 245  Q
    ||||||||||||||||||||||| || | | |||| || ||| |||||||||||||||||| |||||||    
T  16576296 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattag 16576364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 17606655 - 17606568
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||||||||||||||||||| |||| |||||| || |||  |||||| |||| ||||||||||| | ||||| | |||| |||||    
T  17606655 ttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcattgggagtaaatcaccctcaatt 17606568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 35370450 - 35370532
Alignment:
Q  181 tctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    |||||||||||||||||||||||  |||||| ||| || ||| |||||| ||||||||||||||| || || |||||| |||||    
T  35370450 tctccttcattcaacatgtaatacccatctcatttattccag-atcgaaacatacttgtcattaggagcaaattaccctcaatt 35370532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 38576964 - 38576882
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccc 259  Q
    |||||||| |||||||||||||| || | ||||||||| ||  || |||| ||||||| |||||||||| ||||| |||||||    
T  38576964 ttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaattacccc 38576882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 9931331 - 9931393
Alignment:
Q  180 atctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcat 242  Q
    ||||| ||||||  |||||| |||||||||||||||||| || ||||||||| || |||||||    
T  9931331 atctcattcattttacatgtgatattcatctcttttgttccaaaatcgaatcgtatttgtcat 9931393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 29969152 - 29969212
Alignment:
Q  184 ccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatta 244  Q
    |||||||||||||||| |||||||||||||| ||| || ||||||||  ||||||||||||    
T  29969152 ccttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcatta 29969212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 32166825 - 32166741
Alignment:
Q  180 atctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    |||| ||||||| ||||||| || | ||||||||| ||| || ||||||||| |||||||||||||| |||| |||| |||||||    
T  32166825 atcttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaatt 32166741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 32166662 - 32166608
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatc 231  Q
    ||||||||||| |||||||||||||| ||||||||||| |||| ||||| |||||    
T  32166662 ttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatc 32166608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 29093584 - 29093645
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttg 238  Q
    ||||||||||||||||||||||| || | ||||||||| ||| || |||| |||||||||||    
T  29093584 ttcatctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcatacttg 29093645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 40700891 - 40700956
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgt 239  Q
    |||||||| ||||||||| |||||   || |||||||||||||||||||| |||||||||| ||||    
T  40700891 tttttcatatccttcatttaacatacgatcttcatctcttttgtttcagattcgaatcatagttgt 40700956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 35574839 - 35574749
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    |||||||| || |||||| ||||| | || || |||||||| ||| || |||||||||||| ||||||||||  |||| |||||| |||||    
T  35574839 tttttcatatctttcattgaacatatgattttaatctctttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaatt 35574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 12782463 - 12782511
Alignment:
Q  216 gtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    |||||||||||||||  |||||||||||||| |||||||| || |||||    
T  12782463 gtttcagaatcgaattctacttgtcattagaggtaatttatcctcaatt 12782511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 35574670 - 35574610
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcata 234  Q
    ||||||||||| |||||||||||||| || | ||||| ||| ||| || ||||||||||||    
T  35574670 tttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatcata 35574610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 42927590 - 42927634
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtt 218  Q
    |||||||||| ||||||||||||| ||||||  ||||||||||||    
T  42927590 tttttcatcttcttcattcaacatataatatctatctcttttgtt 42927634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 22780371 - 22780303
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattag 245  Q
    ||||| ||||||||||||||||| || |||||| |||| |||| |||||| ||||||| ||||||||||    
T  22780371 ttcatatccttcattcaacatgtgatcttcatccctttcgttttagaatcaaatcatagttgtcattag 22780303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 40483729 - 40483816
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||||  ||||||||||||| || |||||||| || ||| || ||||||||||||||| ||||| |  ||||||||||| |||||    
T  40483729 ttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaatt 40483816  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 14138594 - 14138660
Alignment:
Q  178 tcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatta 244  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| | |||||||| ||| || ||||||    
T  14138594 tcatctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaattatatttatcatta 14138660  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 7215498 - 7215421
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaa 251  Q
    |||||||| | ||||||||||||||| || ||||||||||| ||| ||||| || |||||| |||| |||||| ||||    
T  7215498 tttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaa 7215421  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 2243343 - 2243261
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccc 259  Q
    ||||| ||||||||||||||||| || | |||||  || |||  ||||||||||  |||||||||||||| |||| |||||||    
T  2243343 ttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagaggtaaattacccc 2243261  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 41264430 - 41264496
Alignment:
Q  186 ttcattcaacatgtaatattcatctcttttgtt-tcagaatcgaatcatacttgtcattagaagtaa 251  Q
    |||||||||||||| || ||||||||||| ||| ||| |||||||||||| |||| |||||| ||||    
T  41264430 ttcattcaacatgtgatcttcatctctttcgttatcataatcgaatcataattgttattagaggtaa 41264496  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 17739914 - 17739974
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatactt 237  Q
    ||||||| ||||||| ||||||| || |||||||| || ||| |||||||||||| |||||    
T  17739914 ttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctactt 17739974  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 2562967 - 2563035
Alignment:
Q  175 ttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatt 243  Q
    |||||||||| |||||||||||||| || |  || || ||||||||||||||||||||||||| |||||    
T  2562967 ttttcatctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatt 2563035  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 29152520 - 29152482
Alignment:
Q  172 aatttttcatctccttcattcaacatgtaatattcatct 210  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  29152520 aatttttcatctacttcattcaacatgtaatattcatct 29152482  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 31152919 - 31152841
Alignment:
Q  186 ttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||||| |||| || | ||||||||| |||||| ||||||||| ||||||| |||| | |||| ||||||||||||    
T  31152919 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaatt 31152841  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 31171480 - 31171402
Alignment:
Q  186 ttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 264  Q
    ||||||||| |||| || | ||||||||| |||||| ||||||||| ||||||| |||| | |||| ||||||||||||    
T  31171480 ttcattcaaaatgtgatttccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaatt 31171402  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 32962421 - 32962351
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatta 244  Q
    |||||||||||||| ||||||||| | || | ||| | |||||||||| |||||||||||| || ||||||    
T  32962421 tttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatcatta 32962351  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 23944128 - 23944189
Alignment:
Q  181 tctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcat 242  Q
    |||| |||||||||||||| || | |||||| ||| || |||||||||||||||||| ||||    
T  23944128 tctctttcattcaacatgtgatttccatctcctttattccagaatcgaatcatacttatcat 23944189  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 33362442 - 33362358
Alignment:
Q  174 tttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcattagaagtaatttacccc 259  Q
    ||||| |||||||||||||||||||| || | || ||||||||||  | |||||||||||| ||  |||||| ||||| |||||||    
T  33362442 tttttaatctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatatttaccattag-agtaacttacccc 33362358  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 32138918 - 32138846
Alignment:
Q  172 aatttttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatacttgtcatta 244  Q
    |||| |||||||||||| ||||||||||||| | |||||  || |||  |||| ||||||||||| |||||||    
T  32138918 aattcttcatctccttcgttcaacatgtaatctccatcttcttcgttctagaagcgaatcatactcgtcatta 32138846  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 37000 - 36940
Alignment:
Q  177 ttcatctccttcattcaacatgtaatattcatctcttttgtttcagaatcgaatcatactt 237  Q
    |||||||| || ||||||||||| || |||||||| ||||||||| ||||||||| |||||    
T  37000 ttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctactt 36940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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