View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_low_14 (Length: 238)
Name: NF16986_low_14
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45083838 - 45084064
Alignment:
| Q |
1 |
cacatccacagaccaaaaaatgttatgtttagatcttcattaattagtcaactttttccatgtattcgttgtttgtagctctatgttcatg-ttgaattt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
45083838 |
cacatccacagaccaaaaaatgttatgtttagattttcattaattagtcaactttttccatgtatttgttgtttgtagctctatgttcatgtttgaattt |
45083937 |
T |
|
| Q |
100 |
tgaaaccactccttgtagaatcattttata--tttacctagatttgcagtgaattgtgaaagaactatacacaataca-ttttcattccacacacaca-- |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
45083938 |
tgaaaccactccttgtagaatcattttatatttttacctagatttacagtgaattgtgaaagaactatacacaatacatttttcattgcacacacacaca |
45084037 |
T |
|
| Q |
195 |
--cccgaatttgttagagaaggcttgc |
219 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
45084038 |
ctccggaatttgttagagaaggcttgc |
45084064 |
T |
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