View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16986_low_15 (Length: 235)

Name: NF16986_low_15
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16986_low_15
NF16986_low_15
[»] chr6 (25 HSPs)
chr6 (1-235)||(5352715-5352949)
chr6 (14-199)||(5242399-5242585)
chr6 (14-98)||(5177961-5178045)
chr6 (7-87)||(5180774-5180854)
chr6 (14-98)||(5279786-5279870)
chr6 (152-235)||(5398361-5398444)
chr6 (170-235)||(5100745-5100810)
chr6 (22-136)||(5427130-5427244)
chr6 (170-235)||(5135846-5135911)
chr6 (170-235)||(5351703-5351768)
chr6 (7-93)||(5100812-5100898)
chr6 (7-93)||(5135913-5135999)
chr6 (153-235)||(5439339-5439421)
chr6 (14-96)||(5688894-5688976)
chr6 (14-87)||(5346251-5346324)
chr6 (14-98)||(5098433-5098517)
chr6 (184-235)||(5255999-5256050)
chr6 (32-87)||(5283224-5283279)
chr6 (22-97)||(23127300-23127375)
chr6 (55-196)||(2939178-2939319)
chr6 (28-97)||(5065439-5065508)
chr6 (14-87)||(5398268-5398341)
chr6 (14-98)||(5126618-5126702)
chr6 (14-87)||(5256114-5256187)
chr6 (48-93)||(5372353-5372398)
[»] chr3 (4 HSPs)
chr3 (7-128)||(47985352-47985473)
chr3 (7-128)||(48003926-48004047)
chr3 (8-128)||(47994639-47994759)
chr3 (8-128)||(48013211-48013331)
[»] chr7 (1 HSPs)
chr7 (22-96)||(36212912-36212986)
[»] chr4 (3 HSPs)
chr4 (1-95)||(4122636-4122730)
chr4 (23-97)||(7884145-7884219)
chr4 (29-98)||(4132607-4132676)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5352949 - 5352715
Alignment:
Q  1 atggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggca 100  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5352949 atggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggaa 5352850  T
Q  101 agactttggatttatatcatttaccagatttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagca 200  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5352849 agactttggatttatatcatttaccagatttgaatgtccttgcttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagca 5352750  T
Q  201 cactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    |||||||||||||||||||||||||||||||||||    
T  5352749 cactgaagatgtcaatcagaacagaaagaagaaaa 5352715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 5242585 - 5242399
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactttggattt 113  Q
    ||||||| ||||| ||| |||||||||||||  ||||||| ||||||||||||  | ||||||| ||||||||| ||||||||||||  |    ||| ||    
T  5242585 acaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatgaaccaattggcagaaaaaaggagtt 5242486  T
Q  114 atatcatttaccaga-tttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagc 199  Q
    ||||||| | ||||| ||||||||   || ||| ||| | ||||||| |||| | | |||||||||||||||||| |||||||||||    
T  5242485 atatcatgtgccagattttgaatgacattacttatagaggtgatgaagatgaacgctctgtcaagagattctctactgaagaggagc 5242399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 5177961 - 5178045
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 98  Q
    ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||    
T  5177961 acaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattgg 5178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 5180854 - 5180774
Alignment:
Q  7 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 87  Q
    |||||| ||||||| ||||| ||| |||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  5180854 cccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgat 5180774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 5279786 - 5279870
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 98  Q
    ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||    
T  5279786 acaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattgg 5279870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 5398361 - 5398444
Alignment:
Q  152 atgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    ||||||||||||| | |||||||||||||||||||| |||||| |||| |||||| ||  |||||||||| |||||||||||||    
T  5398361 atgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaa 5398444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 5100810 - 5100745
Alignment:
Q  170 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    |||||||||||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||||||    
T  5100810 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaa 5100745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 5427130 - 5427244
Alignment:
Q  22 gaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactttggatttatatcatt 121  Q
    ||||| ||| |||||||||||||  ||||| | |||| |||||||  | ||||||| ||||||||| ||||||||||||| |   |||| |||||||||     
T  5427130 gaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgatgaaccaattggcaaaaaaatggagttatatcatg 5427229  T
Q  122 taccagatttgaatg 136  Q
    |||||||||||||||    
T  5427230 taccagatttgaatg 5427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 5135911 - 5135846
Alignment:
Q  170 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    |||||||||||||||||| ||||||||||| || ||| ||  ||||||||||||||||||||||||    
T  5135911 ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaa 5135846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 5351703 - 5351768
Alignment:
Q  170 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    |||||||||||||||||| ||||||||||| |||||| ||  | ||||||||||||||||||||||    
T  5351703 ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaa 5351768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 5100898 - 5100812
Alignment:
Q  7 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaacca 93  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| ||| |||||    
T  5100898 cccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 5135999 - 5135913
Alignment:
Q  7 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaacca 93  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| ||| |||||    
T  5135999 cccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 5439339 - 5439421
Alignment:
Q  153 tgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    |||||||||||| | |||||  ||||||||||||| || |||||||| |||||| ||  |||||| |||||||||||||||||    
T  5439339 tgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaa 5439421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 5688976 - 5688894
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaatt 96  Q
    ||||||| ||||| |||  ||||||||||||  ||||||| |||||||| |||||| ||||||| ||||||||| ||||||||    
T  5688976 acaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaatt 5688894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 5346251 - 5346324
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 87  Q
    ||||||| ||||| || |||||| |||||||| ||||||| |||||||||||| ||||||||||  ||||||||    
T  5346251 acaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgat 5346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 5098433 - 5098517
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 98  Q
    ||||||| |||||  |||||||||| |||||  ||||||| ||||| |||||| || ||||||||||||||||| ||| ||||||    
T  5098433 acaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattgg 5098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 5256050 - 5255999
Alignment:
Q  184 tctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 235  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaa 5255999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 5283279 - 5283224
Alignment:
Q  32 ttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 87  Q
    |||||||||| ||  ||||||| |||||||||||| ||||||||||||||||||||    
T  5283279 ttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgat 5283224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 23127375 - 23127300
Alignment:
Q  22 gaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 97  Q
    ||||| ||||| |||||||||||| ||||| | |||||||| |||||| ||||||| ||||||||| ||| |||||    
T  23127375 gaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 2939178 - 2939319
Alignment:
Q  55 gtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatgtacttccttctagtgatg 154  Q
    ||||||||| ||||||||||||| ||||||||| ||||| ||  ||  ||  |||| || |||||| | ||||||||||||| | || ||| |||| | |    
T  2939178 gtgaagaaggcaacaatttatctcgtatatgatgaaccagtttccagaacaatggagttgtatcatgttccagatttgaatgcaatttcttgtagtaacg 2939277  T
Q  155 atgaaaatgagcaccctgtcaagagattctctattgaagagg 196  Q
    |||||||||| | | || |||||||||| |||  ||||||||    
T  2939278 atgaaaatgaactctctatcaagagattatcttctgaagagg 2939319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 5065508 - 5065439
Alignment:
Q  28 gttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 97  Q
    |||||||||||||||||  ||||| | ||||||| ||||||| |||||||  |||||||| |||||||||    
T  5065508 gttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgatgaaccaattg 5065439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 5398268 - 5398341
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 87  Q
    ||||||| ||||| ||  ||||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  5398268 acaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 5126702 - 5126618
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 98  Q
    ||||||| ||| | |||||||||||| ||||  ||||||| |||||||||||| |  |||||||  |||||||| ||||||||||    
T  5126702 acaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgatgaaccaattgg 5126618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 5256187 - 5256114
Alignment:
Q  14 acaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 87  Q
    ||||||| ||||| ||  |||||||  |||||  |||||| |||||||||||| |||||||| |||||||||||    
T  5256187 acaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtatatgat 5256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 5372353 - 5372398
Alignment:
Q  48 tttcatcgtgaagaagacaacaatttatctggtatatgataaacca 93  Q
    |||||| ||||||||||||||||||||||| ||||| ||| |||||    
T  5372353 tttcattgtgaagaagacaacaatttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 47985473 - 47985352
Alignment:
Q  7 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactt 106  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| |||     
T  47985473 cccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaacta 47985374  T
Q  107 tggatttatatcatttaccaga 128  Q
    | ||| | ||||||||||||||    
T  47985373 ttgatctgtatcatttaccaga 47985352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 48004047 - 48003926
Alignment:
Q  7 cccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagactt 106  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| |||     
T  48004047 cccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaacta 48003948  T
Q  107 tggatttatatcatttaccaga 128  Q
    | ||| | ||||||||||||||    
T  48003947 ttgatctgtatcatttaccaga 48003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 47994759 - 47994639
Alignment:
Q  8 ccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagacttt 107  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| ||| |    
T  47994759 ccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaactat 47994660  T
Q  108 ggatttatatcatttaccaga 128  Q
     ||| | ||||||||||||||    
T  47994659 tgatctgtatcatttaccaga 47994639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 48013331 - 48013211
Alignment:
Q  8 ccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattggcaagacttt 107  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||||||||  |||||||||| ||| |    
T  48013331 ccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgataattcaattggcaaaactat 48013232  T
Q  108 ggatttatatcatttaccaga 128  Q
     ||| | ||||||||||||||    
T  48013231 tgatctgtatcatttaccaga 48013211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 36212986 - 36212912
Alignment:
Q  22 gaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaatt 96  Q
    ||||| |||||||||||||||||   |||||| |||||||||||| | ||||||||  | |||||| ||||||||    
T  36212986 gaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatgaaccaatt 36212912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4122730 - 4122636
Alignment:
Q  1 atggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaat 95  Q
    ||||| || ||||||||||| ||| | |||||||||||||  ||  ||||||| |||| ||||||| || |||||||  |||||||| |||||||    
T  4122730 atggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaaccaat 4122636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 7884219 - 7884145
Alignment:
Q  23 aggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 97  Q
    |||||||||||||||||   |||   ||||| |||||||| |||||||||||||| || |||||| |||||||||    
T  7884219 aggtggttgttgtttttacaaatgaattcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaattg 7884145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 4132676 - 4132607
Alignment:
Q  29 ttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattgg 98  Q
    |||||||||||| |||  ||||||| |||| ||||||| || |||||||  |||||||| ||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattgg 4132607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University