View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_low_5 (Length: 444)
Name: NF16986_low_5
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 37937759 - 37937336
Alignment:
| Q |
20 |
agcacataataagctgaccaaaaattgaattcatagaaagacactcggaagcatcccaaacatatnnnnnnn-cacaatagttctaacactaaaaacaaa |
118 |
Q |
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| T |
37937759 |
agcacataataagctgaccaaaaattgaattcatagaaagacactcggaagcatcccaaacatataaaaaaaacacaatagttctaacactaaaaacaaa |
37937660 |
T |
|
| Q |
119 |
cagagtggcagtgacagcatcactatagcagtagtagtagtgaacagtgacactgagtaagcgatagccgagccggctgactagccgaatttcacgcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937659 |
cagagtggcagtgacagcatcactatagcagtagtagtagtgaacagtgacactgagtaagcgatagccgagccggctgactagccgaatttcacgcttc |
37937560 |
T |
|
| Q |
219 |
tcacaaaactacacgcgcacttgcacgtgcaatccccactcttaacacgtaaacacagttttacactcactctcctaatgggactgggaagtggaaacta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37937559 |
tcacaaaactacacgcgcacttgcacgtgcaatccccactcttaacacgtaaacacagttttacactcactctcctaatgagactgggaagtggaaacta |
37937460 |
T |
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| Q |
319 |
tatttattagtggtttaattaattaataaat----aaatgaaggacaaggacaaaaggatcgtccatataactacccattctcaaaccaaaagtaagtgc |
414 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37937459 |
tatttattagtggtttaattaattaataaataaataaatgaaggacaaggacaaaaggatcgtccatataactacccattctcaaaccaaaagtaactgc |
37937360 |
T |
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| Q |
415 |
aacaactctcacttcctatgcttc |
438 |
Q |
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|||||| |||||||||| |||||| |
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| T |
37937359 |
aacaaccctcacttcctctgcttc |
37937336 |
T |
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