View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16986_low_9 (Length: 346)
Name: NF16986_low_9
Description: NF16986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16986_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 23677727 - 23677993
Alignment:
| Q |
1 |
ataagcaatcaaaatcttattgaatgatcacacattgattattatgtgattagggactatttatacaacatgggaattaacaaccaactaaaactaactt |
100 |
Q |
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| T |
23677727 |
ataagcaatcaaaatcttattgaatgatcacacattgattattatgtgattagggactatttatacgacatgggaattaacaaccaactaaaactaactt |
23677826 |
T |
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| Q |
101 |
gtagctcaagtgacctaactaactgtttgttatttaactaaaatcctaactaactac--nnnnnnnncttcagaaaagcctaactttgaatcatatcaac |
198 |
Q |
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| T |
23677827 |
gtagctcaagtgacctaactaactgtttgttatttaactaaaatcctaactaactactttttttcttcttcggaaaagcctaactttgaatcatatcaac |
23677926 |
T |
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| Q |
199 |
taatagtttttctccagctagtgttgcacgctgtagaagatgccgtacatatgtgaatccttatttg |
265 |
Q |
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| T |
23677927 |
taatagtttttctccagctagtgttgcacgctgtagaagatgccgtacatatgtgaatccttatttg |
23677993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 23678209 - 23678278
Alignment:
| Q |
264 |
tgcatactaacataaaagttttcacggttttttcatnnnnnnncaaattaacaaattttactgttgtata |
333 |
Q |
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| T |
23678209 |
tgcatactaacataaaagttttcaaggttttttcataaaaaaacaaattaacaaattttactgttgtata |
23678278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 45881192 - 45881132
Alignment:
| Q |
202 |
tagtttttctccagctagtgttgcacgctgtagaagatgccgtacatatgtgaatccttat |
262 |
Q |
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| T |
45881192 |
tagttttgctccagctagtgttgtacgctgtagaagatgccgcacatacgtgaatccttat |
45881132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 12112592 - 12112491
Alignment:
| Q |
1 |
ataagcaatcaaaatctt-attgaatgatca--cacattgattattatgtgattagggactatttatacaacatgggaattaacaaccaactaaaactaa |
97 |
Q |
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||||||||||| ||| || ||||||||||| || ||||||| ||||| ||||| |||||||||||| ||||||||||| |||||| | |||||||||| |
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| T |
12112592 |
ataagcaatcagaatttttattgaatgatcgatcatattgatttttatgcgattaaggactatttataaaacatgggaatcaacaactacctaaaactaa |
12112493 |
T |
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| Q |
98 |
ct |
99 |
Q |
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|| |
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| T |
12112492 |
ct |
12112491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 12086143 - 12086066
Alignment:
| Q |
25 |
tgatcacacattgattattatgtgattagggactatttatacaacatgggaattaacaaccaactaaaactaacttgt |
102 |
Q |
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| T |
12086143 |
tgatcacatattgatttttatgcgattggtgactatttatgaaacatgggaatcgacaactaactaaaactaacttgt |
12086066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 12091796 - 12091727
Alignment:
| Q |
26 |
gatcacacattgattattatgtgattagggactatttatacaacatgggaattaacaaccaactaaaact |
95 |
Q |
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| T |
12091796 |
gatcacatattaatttttaagcgatttgggactatttatgaaacatgggaatcaacaactaactaaaact |
12091727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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