View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16987_high_1 (Length: 246)
Name: NF16987_high_1
Description: NF16987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16987_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1454508 - 1454269
Alignment:
| Q |
1 |
tcgtaacttcatggcaaaacatgagaatatcatcacggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataaccttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1454508 |
tcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataaccttc |
1454409 |
T |
|
| Q |
101 |
cctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1454408 |
cctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagca |
1454309 |
T |
|
| Q |
201 |
tctttttgatcttttgggccatcatgtttccacaggttct |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
1454308 |
tctttttgatcttttgggccatcatgtttccacagcttct |
1454269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1456026 - 1455816
Alignment:
| Q |
1 |
tcgtaacttcatggcaaaacatgagaatatcatcacggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataaccttc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||| | || | || || | | |
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| T |
1456026 |
tcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccc |
1455927 |
T |
|
| Q |
101 |
cctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagca |
200 |
Q |
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|||||||||||| | ||||||||||||||||||| ||| || ||| | |||| ||||||||||||||||| || ||||||||||||||| |||||||| |
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| T |
1455926 |
cctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagca |
1455827 |
T |
|
| Q |
201 |
tctttttgatc |
211 |
Q |
| |
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|| |||||||| |
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|
| T |
1455826 |
tcattttgatc |
1455816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 1567319 - 1567529
Alignment:
| Q |
1 |
tcgtaacttcatggcaaaacatgagaatatcatcacggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataaccttc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||| | || | || || | | |
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| T |
1567319 |
tcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggcagctttatattagttcaatcccc |
1567418 |
T |
|
| Q |
101 |
cctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagca |
200 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||| || ||| | |||| ||||||||||||||||| || ||||||||||||||| |||||||| |
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|
| T |
1567419 |
cctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagca |
1567518 |
T |
|
| Q |
201 |
tctttttgatc |
211 |
Q |
| |
|
|| |||||||| |
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|
| T |
1567519 |
tcattttgatc |
1567529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1461135 - 1460914
Alignment:
| Q |
1 |
tcgtaacttcatggcaaaacatgagaatatcatcacggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataaccttc |
100 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||| | || || | |
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|
| T |
1461135 |
tcgtaactttatggcgaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggctggcggatattagttcaatgagc |
1461036 |
T |
|
| Q |
101 |
cctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagca |
200 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| || || ||| | |||| |||||||| |||||||| || ||||||||||||| | |||||||| |
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|
| T |
1461035 |
cctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagca |
1460936 |
T |
|
| Q |
201 |
tctttttgatcttttgggccat |
222 |
Q |
| |
|
|| |||||||| ||| |||||| |
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|
| T |
1460935 |
tcattttgatcgtttcggccat |
1460914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1555827 - 1556048
Alignment:
| Q |
1 |
tcgtaacttcatggcaaaacatgagaatatcatcacggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataaccttc |
100 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||| | || || | |
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|
| T |
1555827 |
tcgtaactttatggcgaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggctggcggatattagttcaatgagc |
1555926 |
T |
|
| Q |
101 |
cctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagca |
200 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| || || ||| | |||| |||||||| |||||||| || ||||||||||||| | |||||||| |
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|
| T |
1555927 |
cctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagca |
1556026 |
T |
|
| Q |
201 |
tctttttgatcttttgggccat |
222 |
Q |
| |
|
|| |||||||| ||| |||||| |
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| T |
1556027 |
tcattttgatcgtttcggccat |
1556048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 1750189 - 1750065
Alignment:
| Q |
100 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
199 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||| | |||| ||| |||||| |||| || ||||||||||| ||| |||||||||| ||||| | |
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| T |
1750189 |
ccctattgataacagcgtctttgggatcttattcttacttgaactatcaagtgcaacttcaatcgtagaagttagttatttatcatggactgctgctatc |
1750090 |
T |
|
| Q |
200 |
atctttttgatcttttgggccatca |
224 |
Q |
| |
|
||| || ||| ||||||| ||||| |
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|
| T |
1750089 |
atcgttgcgatattttggggcatca |
1750065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 1754211 - 1754131
Alignment:
| Q |
117 |
tctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgcta |
197 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||| |||||||||| ||||||||| || | ||||||| || ||||| |
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|
| T |
1754211 |
tctttgggatcttattcatacttggactatcaagtgcaatttcagtcatggaagttagttttgtatcatggattgctgcta |
1754131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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