View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16987_high_5 (Length: 375)
Name: NF16987_high_5
Description: NF16987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16987_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 357
Target Start/End: Complemental strand, 11736769 - 11736421
Alignment:
| Q |
9 |
agcagagaagattaagtgtgacacaagatacatgaaacaaatatcattgttgtaacagaaataaatgaaaatgtcgaaagaacagaattgtattataccg |
108 |
Q |
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| T |
11736769 |
agcagagaagattaagtgtgacacaagatacatgaaacaaatatcattattttaacagaaataaatgaaaatgtcgaaagaatagaattctattataccg |
11736670 |
T |
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| Q |
109 |
atgaaatcgatgattagacggccatcagaaaatctatcaacagcctcatggaagaaggtttcaccataaggcaaaatagcaggataaaatgctgcagaca |
208 |
Q |
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| T |
11736669 |
atgaaatcgatgattagacggccatcagaaaatctatcaacagcctcatggaagaaggtctcaccataaggcaaaatagcaggataaaatgctgcagaca |
11736570 |
T |
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| Q |
209 |
tacaaccagtatcagaattagaatcaccaaaattgaaaatagcttgaaattcacatgattgtgaggatttgagtttctctgcttggatactcagaaacca |
308 |
Q |
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| T |
11736569 |
tacaaccagtatctgaattagaatcaccaaaattgaaaatagcttgaaattcacatgattgtgaggatttgagtttctctgcttggatactcaaaaagca |
11736470 |
T |
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| Q |
309 |
agagagtaacnnnnnnntagtagtaaactgtgtaaagaacttcattata |
357 |
Q |
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| T |
11736469 |
agagagtaacaaaacaatagtagtaaactgtgtaaaaaacttcattata |
11736421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 67 - 299
Target Start/End: Complemental strand, 11740870 - 11740638
Alignment:
| Q |
67 |
aaataaatgaaaatgtcgaaagaacagaattgtattataccgatgaaatcgatgattagacggccatcagaaaatctatcaacagcctcatggaagaagg |
166 |
Q |
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| T |
11740870 |
aaataaataaaaaagacgaaagaatagaattgtattataccaatgaaatctatgatgagacgtccatcagaagctctaccagcaccgtcatgaaagaagg |
11740771 |
T |
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| Q |
167 |
tttcaccataaggcaaaatagcaggataaaatgctgcagacatacaaccagtatcagaattagaatcaccaaaattgaaaatagcttgaaattcacatga |
266 |
Q |
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| T |
11740770 |
tttcaccataaggcaaaacagctgggtgaaatgccgctgacatacaaccagtatctgaattagaatcaccaaaattgaaaatagcttgaaattcacatgg |
11740671 |
T |
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| Q |
267 |
ttgtgaggatttgagtttctctgcttggatact |
299 |
Q |
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| T |
11740670 |
ttgtgaggatttgaattcctctgcttgtatact |
11740638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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