View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16987_low_1 (Length: 399)
Name: NF16987_low_1
Description: NF16987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16987_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 2213969 - 2214354
Alignment:
| Q |
5 |
ttattttatatgtctgcaccttggtggcgtctccaatcttttcagttgagtttgcttatctctagacttgtgtttcttgttgagatcaccatgtcgggaa |
104 |
Q |
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| T |
2213969 |
ttattttatatgtctgcactttggtggcgtctccaatcttttcagttgagtttgcttatctctagacttgtgtttcttgttgagatcaccatgtcgggaa |
2214068 |
T |
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| Q |
105 |
gggccattgtgttagctatgtgctgaccttgcatcatcacgaacaaatttattatctcttacaaaactatgtgttcttggactgtgttgtgattacaatc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214069 |
gggccattgtgttagctatgtgctgaccttgcatcatcacgaacaaatttattatctcttacaaaactatgtgttcttggactgtgttgtgattacaatc |
2214168 |
T |
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| Q |
205 |
aaggtttgatgagaatgagaatctggacttgnnnnnnnctccattctagctggtcgttagttctgatctctgatgacaaatcctctacaaaatttcctat |
304 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214169 |
aaggtgtgatgagaatgagaatctggacttg-ttttttctccattctagctggtcgttagttctgatctctgatgacaaatcctctacaaaatttcctat |
2214267 |
T |
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| Q |
305 |
atcgatcgcgcgatctcacgaaggagatttctcgctaacatagtgatggaggtagaagatttggaataggaattatcattgatgatg |
391 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2214268 |
atcgatcgcgcaatctcacgaaggagattcctcgctaacatagtgatggaggtacaagatttggaataggaattatcattgatgatg |
2214354 |
T |
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