View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16987_low_3 (Length: 227)

Name: NF16987_low_3
Description: NF16987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16987_low_3
NF16987_low_3
[»] chr7 (5 HSPs)
chr7 (1-113)||(36519964-36520076)
chr7 (1-113)||(22192665-22192777)
chr7 (1-113)||(22658132-22658244)
chr7 (1-113)||(26813593-26813705)
chr7 (1-113)||(32128746-32128858)
[»] chr6 (7 HSPs)
chr6 (1-113)||(17959763-17959875)
chr6 (1-113)||(34840039-34840151)
chr6 (1-113)||(632972-633084)
chr6 (1-113)||(6379002-6379114)
chr6 (1-113)||(8220402-8220514)
chr6 (1-113)||(24931763-24931875)
chr6 (10-113)||(18640861-18640964)
[»] chr5 (6 HSPs)
chr5 (1-113)||(29618101-29618213)
chr5 (1-113)||(32975069-32975181)
chr5 (1-113)||(40890355-40890467)
chr5 (1-110)||(27943953-27944062)
chr5 (1-113)||(4578451-4578563)
chr5 (4-113)||(9273776-9273885)
[»] chr4 (9 HSPs)
chr4 (1-113)||(3616953-3617065)
chr4 (1-113)||(8993244-8993356)
chr4 (1-113)||(13112022-13112134)
chr4 (1-113)||(2213788-2213900)
chr4 (1-113)||(3531808-3531920)
chr4 (1-113)||(46916015-46916127)
chr4 (1-113)||(16173519-16173631)
chr4 (1-113)||(33605591-33605703)
chr4 (1-113)||(34436643-34436755)
[»] chr3 (15 HSPs)
chr3 (1-113)||(17467972-17468084)
chr3 (1-113)||(30416929-30417041)
chr3 (1-113)||(33189345-33189457)
chr3 (1-113)||(6047195-6047307)
chr3 (1-113)||(25789280-25789392)
chr3 (1-113)||(25831237-25831349)
chr3 (1-113)||(47145623-47145735)
chr3 (1-113)||(42562359-42562471)
chr3 (1-113)||(30689620-30689732)
chr3 (1-113)||(51428548-51428660)
chr3 (1-113)||(33750137-33750249)
chr3 (1-113)||(42600018-42600130)
chr3 (1-96)||(50018464-50018559)
chr3 (16-113)||(21226721-21226818)
chr3 (4-113)||(21230938-21231047)
[»] chr2 (7 HSPs)
chr2 (1-113)||(7587002-7587114)
chr2 (1-113)||(30821082-30821194)
chr2 (1-113)||(8853513-8853625)
chr2 (1-113)||(12856475-12856587)
chr2 (1-113)||(22350113-22350225)
chr2 (1-113)||(40880238-40880350)
chr2 (1-112)||(31206411-31206522)
[»] chr1 (12 HSPs)
chr1 (1-113)||(2476828-2476940)
chr1 (1-113)||(45240596-45240708)
chr1 (1-113)||(48386607-48386719)
chr1 (1-113)||(48405780-48405892)
chr1 (1-113)||(8469776-8469888)
chr1 (1-113)||(17679765-17679877)
chr1 (1-113)||(31469583-31469695)
chr1 (143-227)||(38837975-38838057)
chr1 (3-113)||(33165826-33165936)
chr1 (1-113)||(17784819-17784931)
chr1 (1-113)||(51521648-51521760)
chr1 (50-113)||(47299049-47299112)
[»] chr8 (5 HSPs)
chr8 (1-113)||(1956722-1956834)
chr8 (1-113)||(15055091-15055203)
chr8 (1-113)||(13816393-13816505)
chr8 (1-113)||(17743143-17743255)
chr8 (1-113)||(30531049-30531161)
[»] scaffold1240 (1 HSPs)
scaffold1240 (1-113)||(1272-1384)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-113)||(104299-104411)
[»] scaffold0100 (1 HSPs)
scaffold0100 (10-113)||(29057-29160)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-113)||(167763-167854)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 36520076 - 36519964
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  36520076 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 36519977  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  36519976 gatgcaatgtttc 36519964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22192777 - 22192665
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  22192777 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 22192678  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  22192677 gatgcaatgtttc 22192665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22658244 - 22658132
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||  ||||||||||     
T  22658244 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcgacaaaccaaagactcattgacgactactttgccaacgagcctacatatgac 22658145  T
Q  101 gatgcaatgtttc 113  Q
    ||| |||||||||    
T  22658144 gatccaatgtttc 22658132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26813705 - 26813593
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||||||| ||     
T  26813705 aggtagtgcatctcgtactagaaaatattttaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacataggac 26813606  T
Q  101 gatgcaatgtttc 113  Q
    ||| |||||||||    
T  26813605 gatacaatgtttc 26813593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32128746 - 32128858
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| | |||||  ||||||| ||     
T  32128746 aggtagtgcatctcgtactagaaaatattttaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgctaatgagcctacatacgac 32128845  T
Q  101 gatgcaatgtttc 113  Q
     ||||||| ||||    
T  32128846 aatgcaatatttc 32128858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 17959763 - 17959875
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  17959763 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 17959862  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  17959863 gatgcaatgtttc 17959875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34840151 - 34840039
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  34840151 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 34840052  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  34840051 gatgcaatgtttc 34840039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 633084 - 632972
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  633084 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 632985  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  632984 gatgcaatgtttc 632972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6379002 - 6379114
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  6379002 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 6379101  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  6379102 gatgcaatgtttc 6379114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8220514 - 8220402
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  8220514 aggtagtggatctcatagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 8220415  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  8220414 gatgcaatgtttc 8220402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 24931763 - 24931875
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||| ||| ||     
T  24931763 aggtagtgcatctcgtactagaaaatattttaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctaaatacgac 24931862  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  24931863 gatgcaatgtttc 24931875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 18640964 - 18640861
Alignment:
Q  10 atctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgatgcaatg 109  Q
    |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||  ||||||| || ||| |||||    
T  18640964 atctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgacgactacttggccaatgagcctacatacgacgattcaatg 18640865  T
Q  110 tttc 113  Q
    ||||    
T  18640864 tttc 18640861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29618101 - 29618213
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  29618101 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 29618200  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  29618201 gatgcaatgtttc 29618213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32975069 - 32975181
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  32975069 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 32975168  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  32975169 gatgcaatgtttc 32975181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 40890467 - 40890355
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  40890467 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 40890368  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  40890367 gatgcaatgtttc 40890355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27944062 - 27943953
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  27944062 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 27943963  T
Q  101 gatgcaatgt 110  Q
    ||||||||||    
T  27943962 gatgcaatgt 27943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 4578563 - 4578451
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||| ||||| ||||||||| || |||   ||||||| ||     
T  4578563 aggtagtggatctcgtagtagaaaatatttcaatagagatcatgcagctgcaaaccaaagactaattgatgactactttgccgatgcacctacatacgac 4578464  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  4578463 gatgcaatgtttc 4578451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 9273776 - 9273885
Alignment:
Q  4 tagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgat 103  Q
    ||||| |||| ||| || ||||||||| ||||||||||||| || ||||||||||||| | ||||||||||||||| |||||||  |||||||||| |||    
T  9273776 tagtgcatctggtactagaaaatatttcaatagagatcatggagcggcaaaccaaagaataattgacgactactttgccaatgagcctacatatgacgat 9273875  T
Q  104 gcaatgtttc 113  Q
    ||||||||||    
T  9273876 gcaatgtttc 9273885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3616953 - 3617065
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  3616953 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 3617052  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  3617053 gatgcaatgtttc 3617065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8993356 - 8993244
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  8993356 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 8993257  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  8993256 gatgcaatgtttc 8993244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13112134 - 13112022
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  13112134 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 13112035  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  13112034 gatgcaatgtttc 13112022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2213788 - 2213900
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  2213788 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 2213887  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  2213888 gatgcaatgtttc 2213900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3531808 - 3531920
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  3531808 aggtagtggatctcgtagtagaaaatatctaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 3531907  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  3531908 gatgcaatgtttc 3531920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 46916015 - 46916127
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||  ||||||||||     
T  46916015 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcaggggcaaaccaaagactcattgccgactactttgccaatgagcctacatatgac 46916114  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  46916115 gatgcaatgtttc 46916127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16173519 - 16173631
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||  ||| ||||||     
T  16173519 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagaagcaaaccaaagactcattgacgactactttgccaatgagcctatatatgac 16173618  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  16173619 gatgcaatgtttc 16173631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 33605703 - 33605591
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || |||||||||||||||||||||||||| || |||||||||||| |||||||||| |||| |||||||   |||||| ||     
T  33605703 aggtagtgcatctcgtactagaaaatatttaaatagagatcatgcagcggaaaaccaaagactaattgacgactgctttgccaatgagcgtacatacgac 33605604  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  33605603 gatgcaatgtttc 33605591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 34436643 - 34436755
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||  |||||||||||||| ||||||| ||||||| |||||||  ||||||| ||     
T  34436643 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcagcaaaccaaagactaattgacggctactttgccaatgagcctacatacgac 34436742  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  34436743 gatgcaatgtttc 34436755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17468084 - 17467972
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  17468084 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 17467985  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  17467984 gatgcaatgtttc 17467972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30416929 - 30417041
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  30416929 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 30417028  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  30417029 gatgcaatgtttc 30417041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 33189345 - 33189457
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  33189345 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 33189444  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  33189445 gatgcaatgtttc 33189457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6047195 - 6047307
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  6047195 aggtagtggatctcgtagtagaaaatatctaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 6047294  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  6047295 gatgcaatgtttc 6047307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 25789280 - 25789392
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  25789280 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 25789379  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  25789380 gatgcaatgtttc 25789392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 25831237 - 25831349
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  25831237 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 25831336  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  25831337 gatgcaatgtttc 25831349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 47145735 - 47145623
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  47145735 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 47145636  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  47145635 gatgcaatgtttc 47145623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42562471 - 42562359
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||  ||||||| ||     
T  42562471 aggtagtggatctcatagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcgttgatgactactttgccaatgagcctacatacgac 42562372  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  42562371 gatgcaatgtttc 42562359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30689620 - 30689732
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||| |||||||  ||||||||||     
T  30689620 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcaacggcaaaccaaagactaattgacgactactttgccaatgagcctacatatgac 30689719  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  30689720 gatgcaatgtttc 30689732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 51428660 - 51428548
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||| | |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||||||| ||     
T  51428660 aggtagcgcatctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacatacgaa 51428561  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  51428560 gatgcaatgtttc 51428548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 33750249 - 33750137
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| || |||||||||||| ||| ||||||||||| |||||||  ||||||| ||     
T  33750249 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcggaaaaccaaagactaattaacgactactttgccaatgagcctacatacgac 33750150  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  33750149 gatgcaatgtttc 33750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42600018 - 42600130
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||| ||||| ||||||||| || |||   ||||||| ||     
T  42600018 aggtagtggatctcgtagtagaaaatatttcaatagagatcatgcagctgcaaaccaaagactaattgatgactactttgccgatgcacctacatacgac 42600117  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  42600118 gatgcaatgtttc 42600130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 50018559 - 50018464
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacata 96  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  |||||||    
T  50018559 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacata 50018464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 21226818 - 21226721
Alignment:
Q  16 tagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgatgcaatgtttc 113  Q
    ||||| ||||||| | |||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| |  |||||||||| |||||||||||||    
T  21226818 tagtagaaaatatctcaatagagatcatgcagcggcaaaccaaagactaattaacgactactttgccaataagcctacatatgacgatgcaatgtttc 21226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 21230938 - 21231047
Alignment:
Q  4 tagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgat 103  Q
    ||||| || |||||||| ||||||| | |||||| || |||||| ||| ||||||||||| ||||||||||||||| |||||||  |||||||||| |||    
T  21230938 tagtgcatgtcgtagtagaaaatatctcaatagatattatgcagcggcgaaccaaagactaattgacgactactttgccaatgagcctacatatgacgat 21231037  T
Q  104 gcaatgtttc 113  Q
    ||||||||||    
T  21231038 gcaatgtttc 21231047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 7587002 - 7587114
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  7587002 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 7587101  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  7587102 gatgcaatgtttc 7587114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30821082 - 30821194
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  30821082 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 30821181  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  30821182 gatgcaatgtttc 30821194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8853625 - 8853513
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  8853625 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttaccaatgagcctacatatgac 8853526  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  8853525 gatgcaatgtttc 8853513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12856587 - 12856475
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  12856587 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 12856488  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  12856487 gatgcaatgtttc 12856475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22350113 - 22350225
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  22350113 aggtagtggatctcgtagtagaaaatatctaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 22350212  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  22350213 gatgcaatgtttc 22350225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40880238 - 40880350
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||  ||||||| |||    
T  40880238 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgtagcggcaaaccaaagactaattgacgactactttgccaatgagcctacatacgat 40880337  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  40880338 gatgcaatgtttc 40880350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 31206411 - 31206522
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| ||||||||||||| || || |||| ||||||| ||||||||||||||| |||||||  ||||||||||     
T  31206411 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgtagcggaaaactaaagactaattgacgactactttgccaatgagcctacatatgac 31206510  T
Q  101 gatgcaatgttt 112  Q
    ||||||||||||    
T  31206511 gatgcaatgttt 31206522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2476828 - 2476940
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  2476828 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 2476927  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  2476928 gatgcaatgtttc 2476940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 45240708 - 45240596
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  45240708 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 45240609  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  45240608 gatgcaatgtttc 45240596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 48386607 - 48386719
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  48386607 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 48386706  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  48386707 gatgcaatgtttc 48386719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 48405892 - 48405780
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  48405892 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 48405793  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  48405792 gatgcaatgtttc 48405780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8469888 - 8469776
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||     
T  8469888 aggtagtggatctcgtagtagataatatttaaatagagatcatgcagtggcaaaccaaagaatcattgacgactactttgccaatgagcctacatatgac 8469789  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  8469788 gatgcaatgtttc 8469776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 17679765 - 17679877
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  17679765 aggtagtggatctcatagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgat 17679864  T
Q  101 gatgcaatgtttc 113  Q
    | |||||||||||    
T  17679865 gttgcaatgtttc 17679877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31469695 - 31469583
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  31469695 aggtagtggatctcgtagtagaaaatatttaaagagagatcatgcaggggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 31469596  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  31469595 gatgcaatgtttc 31469583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 38837975 - 38838057
Alignment:
Q  143 atcaaaaccattactatacagacaagcagaatgtggtggatgaccatattttttcttttggttcaacaagtaattccaatcataa 227  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38837975 atcaaaaccattacta--cagataagcagaatgtggtggatgaccatattttttcttttggttcaacaagtaattccaatcataa 38838057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 33165936 - 33165826
Alignment:
Q  3 gtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatga 102  Q
    |||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||||||| || ||    
T  33165936 gtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacatacgacga 33165837  T
Q  103 tgcaatgtttc 113  Q
    |||||||||||    
T  33165836 tgcaatgtttc 33165826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17784931 - 17784819
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||  ||||||| |||||| ||||||||||||||| |||||||  ||||||| ||     
T  17784931 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcagcaaaccgaagactaattgacgactactttgccaatgagcctacatacgac 17784832  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  17784831 gatgcaatgtttc 17784819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 51521760 - 51521648
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    ||||| || |||||||| |  ||||||||| |||||||||||||    ||||||||||||||| ||||||||||||||| |||||||  ||||||||||     
T  51521760 aggtattgcatctcgtactggaaaatatttcaatagagatcatgagcgggcaaaccaaagactaattgacgactacttttccaatgagcctacatatgac 51521661  T
Q  101 gatgcaatgtttc 113  Q
    |||||||| ||||    
T  51521660 gatgcaatctttc 51521648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 47299049 - 47299112
Alignment:
Q  50 gcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgatgcaatgtttc 113  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  47299049 gcaaaccaaagactcattgacgactactttgccaatgagcctacatatgacgatgcaatgtttc 47299112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 1956722 - 1956834
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||||      
T  1956722 aggtagtggatctcgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatggc 1956821  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  1956822 gatgcaatgtttc 1956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 15055203 - 15055091
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||     
T  15055203 aggtagtggatcttgtagtagaaaatatttaaatagagatcatgcagcggcaaaccaaagactcattgacgactactttgccaatgagcctacatatgac 15055104  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  15055103 gatgcaatgtttc 15055091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13816505 - 13816393
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||||||| |||    
T  13816505 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacatacgat 13816406  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  13816405 gatgcaatgtttc 13816393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17743255 - 17743143
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||||||||||     
T  17743255 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacatatgac 17743156  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  17743155 gatgcaatgtttc 17743143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30531049 - 30531161
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||  ||||||| ||     
T  30531049 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagcggcaaaccaaagactaattgatgactactttgccaatgagcctacatacgac 30531148  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  30531149 gatgcaatgtttc 30531161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 1272 - 1384
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  ||||||| ||     
T  1272 aggtagtgcatctcgtactagaaaatatttcaatagagatcatgcagtggcaaaccaaagactaattgacgactactttgccaatgagcctacatacgac 1371  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  1372 gatgcaatgtttc 1384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 104411 - 104299
Alignment:
Q  1 aggtagtggatctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgat 100  Q
    |||||||| ||||| || || ||||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||| |||||||  ||||||| ||     
T  104411 aggtagtgcatctcttactagaaaatattttaatagagattatgcagcggcaaaccaaagactaattgacgactactttgccaatgagcctacatacgac 104312  T
Q  101 gatgcaatgtttc 113  Q
    |||||||||||||    
T  104311 gatgcaatgtttc 104299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 29057 - 29160
Alignment:
Q  10 atctcgtagtataaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgatgcaatg 109  Q
    |||||||| || ||||||||| |||||||||||||||| || |||||||||||| ||||||||||| ||| |||||||  ||||||| || |||||||||    
T  29057 atctcgtactagaaaatatttcaatagagatcatgcagcggaaaaccaaagactaattgacgactaatttgccaatgagcctacatacgacgatgcaatg 29156  T
Q  110 tttc 113  Q
    ||||    
T  29157 tttc 29160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 167763 - 167854
Alignment:
Q  22 aaaatatttaaatagagatcatgcagtggcaaaccaaagactcattgacgactactttcccaatgattctacatatgatgatgcaatgtttc 113  Q
    ||||||| | |||||||||||||||| || |||||||||||| ||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  167763 aaaatatctcaatagagatcatgcagcggaaaaccaaagactaattgacgactactttgccaatgagcctacatatgacgatgcaatgtttc 167854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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