View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_high_14 (Length: 239)
Name: NF16988_high_14
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23359424 - 23359644
Alignment:
| Q |
1 |
tgcaatttcatggggttgtagtcgaacaacagcatctgtttt---aggaattggtagatatacggccatgcgttacatgttttctttactgaaagatgtt |
97 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
23359424 |
tgcaatttcatggggttgtagtggaacaacagcatctgttttgttaggaattggtagatatacggccaggcgttacattttttctttactgaaagatgtt |
23359523 |
T |
|
| Q |
98 |
gttttaaa-ttcgtggagtttgttagcttttggtgataatagtgggcattttatttgtttcaattggcgcttggttgtactttgtaaactggttgtaatt |
196 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23359524 |
gttttttagttcgtggagtttgttagcttttggtgataatagtgagcattttatttgtttcaattggagcttggttgtactttgtaaactggttgtaatt |
23359623 |
T |
|
| Q |
197 |
ttgctcggttcttgcacatct |
217 |
Q |
| |
|
| |||| |||||||||||||| |
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|
| T |
23359624 |
tcgctcagttcttgcacatct |
23359644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23364245 - 23364465
Alignment:
| Q |
1 |
tgcaatttcatggggttgtagtcgaacaacagcatctgtttt---aggaattggtagatatacggccatgcgttacatgttttctttactgaaagatgtt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
23364245 |
tgcaatttcatggggttgtagcagaacaacagcatctgttttgttaggaattggtagatatacggccaggcgttacattttttctttactgaaagatgtt |
23364344 |
T |
|
| Q |
98 |
gttttaaa-ttcgtggagtttgttagcttttggtgataatagtgggcattttatttgtttcaattggcgcttggttgtactttgtaaactggttgtaatt |
196 |
Q |
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| T |
23364345 |
gttttttagttcgtggagtttgttagcttttggtgataatagtgagcattttatttgtttcaattggagcttggttgtactttgtaaactggttgtaatt |
23364444 |
T |
|
| Q |
197 |
ttgctcggttcttgcacatct |
217 |
Q |
| |
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| ||||||||||||||||||| |
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|
| T |
23364445 |
tcgctcggttcttgcacatct |
23364465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23694723 - 23694943
Alignment:
| Q |
1 |
tgcaatttcatggggttgtagtcgaacaacagcatctgtttt---aggaattggtagatatacggccatgcgttacatgttttctttactgaaagatgtt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
23694723 |
tgcaatttcatggggttgtagcagaacaacagcatctgttttgttaggaattggtagatatacggccaggcgttacattttttctttactgaaagatgtt |
23694822 |
T |
|
| Q |
98 |
gttttaaa-ttcgtggagtttgttagcttttggtgataatagtgggcattttatttgtttcaattggcgcttggttgtactttgtaaactggttgtaatt |
196 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23694823 |
gttttttagttcgtggagtttgttagcttttggtgataatagtgagcattttatttgtttcaattggagcttggttgtactttgtaaactggttgtaatt |
23694922 |
T |
|
| Q |
197 |
ttgctcggttcttgcacatct |
217 |
Q |
| |
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| ||||||||||||||||||| |
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|
| T |
23694923 |
tcgctcggttcttgcacatct |
23694943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23713163 - 23713383
Alignment:
| Q |
1 |
tgcaatttcatggggttgtagtcgaacaacagcatctgtttt---aggaattggtagatatacggccatgcgttacatgttttctttactgaaagatgtt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
23713163 |
tgcaatttcatggggttgtagcagaacaacagcatctgttttgttaggaattggtagatatacggccaggcgttacattttttctttactgaaagatgtt |
23713262 |
T |
|
| Q |
98 |
gttttaaa-ttcgtggagtttgttagcttttggtgataatagtgggcattttatttgtttcaattggcgcttggttgtactttgtaaactggttgtaatt |
196 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23713263 |
gttttttagttcgtggagtttgttagcttttggtgataatagtgagcattttatttgtttcaattggagcttggttgtactttgtaaactggttgtaatt |
23713362 |
T |
|
| Q |
197 |
ttgctcggttcttgcacatct |
217 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
23713363 |
tcgctcggttcttgcacatct |
23713383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23731619 - 23731839
Alignment:
| Q |
1 |
tgcaatttcatggggttgtagtcgaacaacagcatctgtttt---aggaattggtagatatacggccatgcgttacatgttttctttactgaaagatgtt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
23731619 |
tgcaatttcatggggttgtagcagaacaacagcatctgttttgttaggaattggtagatatacggccaggcgttacattttttctttactgaaagatgtt |
23731718 |
T |
|
| Q |
98 |
gttttaaa-ttcgtggagtttgttagcttttggtgataatagtgggcattttatttgtttcaattggcgcttggttgtactttgtaaactggttgtaatt |
196 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23731719 |
gttttttagttcgtggagtttgttagcttttggtgataatagtgagcattttatttgtttcaattggagcttggttgtactttgtaaactggttgtaatt |
23731818 |
T |
|
| Q |
197 |
ttgctcggttcttgcacatct |
217 |
Q |
| |
|
| ||||||||||||||||||| |
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| T |
23731819 |
tcgctcggttcttgcacatct |
23731839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23750074 - 23750294
Alignment:
| Q |
1 |
tgcaatttcatggggttgtagtcgaacaacagcatctgtttt---aggaattggtagatatacggccatgcgttacatgttttctttactgaaagatgtt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
23750074 |
tgcaatttcatggggttgtagcagaacaacagcatctgttttgttaggaattggtagatatacggccaggcgttacattttttctttactgaaagatgtt |
23750173 |
T |
|
| Q |
98 |
gttttaaa-ttcgtggagtttgttagcttttggtgataatagtgggcattttatttgtttcaattggcgcttggttgtactttgtaaactggttgtaatt |
196 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23750174 |
gttttttagttcgtggagtttgttagcttttggtgataatagtgagcattttatttgtttcaattggagcttggttgtactttgtaaactggttgtaatt |
23750273 |
T |
|
| Q |
197 |
ttgctcggttcttgcacatct |
217 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
23750274 |
tcgctcggttcttgcacatct |
23750294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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