View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_high_3 (Length: 471)
Name: NF16988_high_3
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 4878438 - 4878000
Alignment:
| Q |
16 |
atattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagtttttggct |
115 |
Q |
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| T |
4878438 |
atattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagtttttggct |
4878339 |
T |
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| Q |
116 |
tttgagaataatgtttagatttcttttcaagtagctctataccaaaattaaatttctgcactatctgttgtaatagatttcaccatttaaactaatggtt |
215 |
Q |
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| T |
4878338 |
tttgagaataatgtttagatttcttttcaagtagctctataccaaaattaaatttctgcactatctgttgtaatagatttcaccatttaaactaatggtt |
4878239 |
T |
|
| Q |
216 |
tattggttttatgtcaattttgatgttttaacacagtatgagggtgataatacattccaatttttggagcctatatcaagtaaaactatgaaatgtcaac |
315 |
Q |
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| T |
4878238 |
tattggttttatgtcaattttgatgttttaacacagtatgagggtgataatccattccaatttttggagcctatatcaagtaaaactatgaaatgtcaac |
4878139 |
T |
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| Q |
316 |
aaactatttataaacttaactcatcacaactcaactatcatttagtagatagtattcgacaatattcaagctaaaacaaccatcttcaaaagtattttat |
415 |
Q |
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| T |
4878138 |
aaactatttataaacttaactcatcacaactcaactatcatttagtagatagtattcgacaatattcaagctaaaacaaccatcttcaaaagtattttat |
4878039 |
T |
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| Q |
416 |
tgattaaacaaatttctcaatcagaaaatcacagcaaca |
454 |
Q |
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| T |
4878038 |
tgatcaaacaaatttctcaatcagaaaatcacagcaaca |
4878000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 12534046 - 12534215
Alignment:
| Q |
16 |
atattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagtttttggct |
115 |
Q |
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|||||||| |||||||||||| |||||| || |||||| | ||| ||| |||||||||||| | ||||||||||||||||||||||||| ||||| ||| |
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| T |
12534046 |
atattgaattagtatataagaatggataaaatagaatattctggtccataataaatgtattccaccattttgcaaatttgtgcatatgcacttttttgct |
12534145 |
T |
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| Q |
116 |
tttgagaataatgtttagatttcttttcaagtagctct-ataccaaaattaaatttctgcactatctgtt |
184 |
Q |
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|| ||| | ||||| |||||| |||||| |||||| | |||||||||||| ||||||||||||| |||| |
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| T |
12534146 |
gttaagagttatgttcagatttgttttcatgtagctgtgataccaaaattatatttctgcactatttgtt |
12534215 |
T |
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