View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_high_6 (Length: 419)
Name: NF16988_high_6
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 28 - 414
Target Start/End: Original strand, 7716197 - 7716584
Alignment:
| Q |
28 |
ttttttatgtgtgtttgtagatttcaagtacaagaaagattcggtgatggaagttggcaaggaaaattacgatgattgcaatgcgacacaaccaacattt |
127 |
Q |
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| T |
7716197 |
ttttttttatgtgtttgtagatttcaagtacaagaaggattcagtgatggaagttggcaaggaaaattacgatgattgcaatgcgacacaaccaacattt |
7716296 |
T |
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| Q |
128 |
ttctcaaacaatggaaacaccgagttcaagttaaatcattcagggacattctacttcataagtggtgcatcaggacattgtgagaaaggacaaaagatga |
227 |
Q |
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| T |
7716297 |
ttctcaaacaatggaaacactgagttcaagttaaatcattcagggacattctacttcataagtggtgcaacaggacattgtgagaaaggacaaaagatga |
7716396 |
T |
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| Q |
228 |
ttgttagagtgatgattcaagatgttcattctaagtcttctggttaccatgttcctgttggtgtttttcaaattgtgtttgttttggcatttgttgcttc |
327 |
Q |
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| T |
7716397 |
ttgttagagtgatgattcaagatgttcattctaagtcttctggttaccatgttcctgttggtgtttttcaaattgtgtttgttttggcatttgttgcttc |
7716496 |
T |
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| Q |
328 |
ctatgtaatttgagtactt-ggaaatttaatttgtttgctagtaatagtgcattatgtttccctttaatttgattctagcttcctttg |
414 |
Q |
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| T |
7716497 |
ctatgtaatttgagtacttaggaaatttaatttgtttgctagtaatagtgcattatgtttctctttaatttgattctagcttgctttg |
7716584 |
T |
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