View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_low_10 (Length: 361)
Name: NF16988_low_10
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 191 - 361
Target Start/End: Original strand, 15294456 - 15294626
Alignment:
| Q |
191 |
taaaatacacagcttgaaattcccataaaattctagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaacagatgatca |
290 |
Q |
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| T |
15294456 |
taaaatacacagcttgaaattcacataaaattccagcctataagaaagtaattggagtaacaccaagatgtccacaagctggttctctaactgatgatca |
15294555 |
T |
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| Q |
291 |
ttcctcggcgactgattaaagcacccctgtacatgttacaacagtacagacagagaaacagacatagaaga |
361 |
Q |
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| T |
15294556 |
ttcctcggcggctgattaaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaaga |
15294626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 199 - 344
Target Start/End: Original strand, 15301660 - 15301804
Alignment:
| Q |
199 |
acagcttgaaattcccataaaattctagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaacagatgatcattcctcgg |
298 |
Q |
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| T |
15301660 |
acagcttgaa-ttcccataaaattccagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaactgatgatcattcctcgg |
15301758 |
T |
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| Q |
299 |
cgactgattaaagcacccctgtacatgttacaacagtacagacaga |
344 |
Q |
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| T |
15301759 |
cgactgattaaagcacccctttacatgttacaacagtacaaacaga |
15301804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 40693746 - 40693830
Alignment:
| Q |
246 |
agtaacaccaa-gatgtccacaagctggttctctaacagatgatcattcctcggcgactgattaaagcacccctgtacatgttacaa |
331 |
Q |
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| T |
40693746 |
agtaacaccaaagttgtccacaagctggttctcaaaccgatcat--ttccacgacgacttatgaaagctcccctgtacatgttacaa |
40693830 |
T |
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