View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16988_low_12 (Length: 332)

Name: NF16988_low_12
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16988_low_12
NF16988_low_12
[»] chr3 (12 HSPs)
chr3 (249-331)||(23359283-23359366)
chr3 (249-331)||(23364104-23364187)
chr3 (249-331)||(23694582-23694665)
chr3 (249-331)||(23713022-23713105)
chr3 (249-331)||(23731478-23731561)
chr3 (249-331)||(23749933-23750016)
chr3 (104-146)||(23359134-23359176)
chr3 (104-146)||(23363955-23363997)
chr3 (104-146)||(23694433-23694475)
chr3 (104-146)||(23712873-23712915)
chr3 (104-146)||(23731329-23731371)
chr3 (104-146)||(23749784-23749826)
[»] chr7 (1 HSPs)
chr7 (272-331)||(23865764-23865823)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 23359283 - 23359366
Alignment:
Q  249 tgttttctgagaagctttagtttggtacggtttagtctg-ctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  23359283 tgttatctgagaagctttggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttgga 23359366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 23364104 - 23364187
Alignment:
Q  249 tgttttctgagaagctttagtttggtacggtttagtctg-ctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  23364104 tgttatctgagaagctttggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttgga 23364187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 23694582 - 23694665
Alignment:
Q  249 tgttttctgagaagctttagtttggtacggtttagtctg-ctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  23694582 tgttatctgagaagctttggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttgga 23694665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 23713022 - 23713105
Alignment:
Q  249 tgttttctgagaagctttagtttggtacggtttagtctg-ctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  23713022 tgttatctgagaagctttggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttgga 23713105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 23731478 - 23731561
Alignment:
Q  249 tgttttctgagaagctttagtttggtacggtttagtctg-ctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  23731478 tgttatctgagaagctttggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttgga 23731561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 23749933 - 23750016
Alignment:
Q  249 tgttttctgagaagctttagtttggtacggtttagtctg-ctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||    
T  23749933 tgttatctgagaagctttggttcggtacggtttagtctctctggctgattgctgcatatatctgtgtttctggttggttttgga 23750016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 23359134 - 23359176
Alignment:
Q  104 ttggtcaaatagagtcttggttaagagtagcatttgatatggt 146  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  23359134 ttggtcaaatagaggcacggttaagagtagcatttgatatggt 23359176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 23363955 - 23363997
Alignment:
Q  104 ttggtcaaatagagtcttggttaagagtagcatttgatatggt 146  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  23363955 ttggtcaaatagaggcacggttaagagtagcatttgatatggt 23363997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 23694433 - 23694475
Alignment:
Q  104 ttggtcaaatagagtcttggttaagagtagcatttgatatggt 146  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  23694433 ttggtcaaatagaggcacggttaagagtagcatttgatatggt 23694475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 23712873 - 23712915
Alignment:
Q  104 ttggtcaaatagagtcttggttaagagtagcatttgatatggt 146  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  23712873 ttggtcaaatagaggcacggttaagagtagcatttgatatggt 23712915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 23731329 - 23731371
Alignment:
Q  104 ttggtcaaatagagtcttggttaagagtagcatttgatatggt 146  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  23731329 ttggtcaaatagaggcacggttaagagtagcatttgatatggt 23731371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 23749784 - 23749826
Alignment:
Q  104 ttggtcaaatagagtcttggttaagagtagcatttgatatggt 146  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  23749784 ttggtcaaatagaggcacggttaagagtagcatttgatatggt 23749826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 23865823 - 23865764
Alignment:
Q  272 ggtacggtttagtctgctggctgattgctgcatatatctgtgtttctggttagttttgga 331  Q
    |||| ||||||||||| | || ||||||||||||||||||||||| ||||| ||||||||    
T  23865823 ggtatggtttagtctgttcgccgattgctgcatatatctgtgtttatggttggttttgga 23865764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University