View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16988_low_13 (Length: 302)
Name: NF16988_low_13
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16988_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 4345274 - 4345571
Alignment:
| Q |
1 |
cttatagttttggtagttgaattat-attcatgtatcgattacatgataatgtgatatctgtagaactgttgcgaaatacatgcaagtgtttgcatttct |
99 |
Q |
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| T |
4345274 |
cttatagttttggtagttgaattattattcatgtatcgattacatgataatgtgatatctttagaactgttgcgaaatacatgcaagtgtttgcatttct |
4345373 |
T |
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| Q |
100 |
tttgctatataggtataaacatttaataattgaaataatggaatcctagaa----atatttttctttttaaagcatcttctataaacatatagatatttt |
195 |
Q |
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| T |
4345374 |
tttgctatataggtataaacatttaataattgaaataatggaatcctagaaatatatatatatttttttaaagcatcttctataaacatatagatatttt |
4345473 |
T |
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| Q |
196 |
tcatacaatcatcataaattttgcttttagtcaccgactgcttaaattacatttggtgagcgtgacccagttttagaacgatgcgatttgattcatct |
293 |
Q |
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| T |
4345474 |
tcatacaatcatcataaattttgcttttagtcaccgactgcttaaattacatttggtgagcgtgacccagttttagaacgatgcgatttgattcatct |
4345571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4361729 - 4361788
Alignment:
| Q |
1 |
cttatagttttggtagttgaattatattca-tgtatcgattacatgataatgtgatatct |
59 |
Q |
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| T |
4361729 |
cttatagttttggtagttgaattatttttagtatatcgattatatgataatgtgatatct |
4361788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 4336014 - 4336103
Alignment:
| Q |
184 |
tatagatatttttcatacaatcatcataaattttgcttttagtcaccgactgcttaaattacatttg-gtgagcgtgacccagttttagaa |
273 |
Q |
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| T |
4336014 |
tatagatttttttcatacaatcatcacaaattttggttttagtca-caactacttaaataatatttgcatgagcgtgaccgagtttaagaa |
4336103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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