View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16988_low_2 (Length: 506)

Name: NF16988_low_2
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16988_low_2
NF16988_low_2
[»] chr3 (3 HSPs)
chr3 (13-489)||(38248704-38249180)
chr3 (16-445)||(38237364-38237790)
chr3 (34-489)||(38253854-38254297)
[»] chr2 (1 HSPs)
chr2 (16-487)||(22176769-22177242)
[»] chr1 (2 HSPs)
chr1 (16-485)||(4355120-4355589)
chr1 (16-485)||(4675323-4675792)
[»] chr6 (8 HSPs)
chr6 (277-489)||(20656611-20656823)
chr6 (297-489)||(20656283-20656475)
chr6 (16-87)||(302590-302661)
chr6 (365-487)||(12036216-12036338)
chr6 (300-359)||(12036371-12036430)
chr6 (297-332)||(20656560-20656595)
chr6 (34-140)||(34233215-34233321)
chr6 (453-485)||(12036472-12036504)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Original strand, 38248704 - 38249180
Alignment:
Q  13 aatatggaagtgtctcaagacattgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaat 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38248704 aatatggaagtgtctcaagacattgctgttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaat 38248803  T
Q  113 tttcagaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattcaacccgatcaaataagccaaaggta 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38248804 tttcggaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattcaacccgatcaaataagccaaaggta 38248903  T
Q  213 cacaaaaagagtagagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcagtttgtgtctta 312  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38248904 cacaaaaagagtacagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcaatttgtgtctta 38249003  T
Q  313 gcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttccattc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38249004 gcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttccattc 38249103  T
Q  413 ctacccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgactac 489  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38249104 ctacccccgagtcacttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgactac 38249180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 38237364 - 38237790
Alignment:
Q  16 atggaagtgtctcaagaca---ttgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaat 112  Q
    |||||||| ||||||||||   ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||   | |    
T  38237364 atggaagtttctcaagacaatattgcttttgagatattttcttggctaccgacaaaaagcatttgcaagctcaaatcaacttgcaactcatcctcccagt 38237463  T
Q  113 tttcagaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattc---aacccgatcaaataagccaaag 209  Q
    |||| ||||||    |||| |||||||||||||| |  ||| |||| |||| |||||| ||||| ||||||||||   |||||||||||||||| |||||    
T  38237464 tttcggaagaaatacttttcaaaacaaagcaggcacaaaatatgtttgggagggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaag 38237563  T
Q  210 gtacacaaaaagagtagagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcagtttgtgtc 309  Q
     |||||  ||| ||||||||| || ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  38237564 ttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttctggtgcccctaacgaagctttgagtttcctatcaaattcagtttgtgtc 38237663  T
Q  310 ttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttcca 409  Q
    | |||||||||||||||||||||||||||||||||||||||||||||         ||||||| |  | || |||||||| |||||||| |||||||| |    
T  38237664 tcagcttctagtaatggtctagttgttggtcacaccattaatgatca---------tgagtttgtagtatgtaatccagttacaaagtcctggtcttcaa 38237754  T
Q  410 ttcctacccccgagtcgcttcaaagaaaccatagtt 445  Q
    |||| |||||| ||||  ||||||||||||||||||    
T  38237755 ttccaacccccaagtcatttcaaagaaaccatagtt 38237790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 34 - 489
Target Start/End: Original strand, 38253854 - 38254297
Alignment:
Q  34 attgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaattttcagaagaagctgttttta 133  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| |||| ||   | ||||| |||||| |  |||| |    
T  38253854 attgcttttgagatattttcttggctaccggcaaaaggcatttgcaagctcaaatcaacttgcaattcatcctcccagttttcggaagaaacacttttca 38253953  T
Q  134 aaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattc---aacccgatcaaataagccaaaggtacacaaaaagagtagagtt 230  Q
    ||||||||||||| | |||| |||| |||| || ||| ||||| ||||||||||   |||||||||||||| | | ||| || ||  ||| |||||||||    
T  38253954 aaacaaagcaggcacataatatgtttgggaggggtgacacatgcttcttcattcttcaacccgatcaaataggtcgaagttatactgaaatagtagagtt 38254053  T
Q  231 gcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcagtttgtgtcttagcttctagtaatggtcta 330  Q
     ||||||||||||               || |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38254054 acattctttacct---------------tctggtgcccctaacaaagctttgagtttcctatcaaattcagtttctgtcttagcttctagtaatggtcta 38254138  T
Q  331 gttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttcca-ttcctacccccgagtcgctt 429  Q
    ||||||||||||| ||||||||||||||| || ||||||||| | || || |||||||| || ||||| ||||||| || ||||||| || |||||  ||    
T  38254139 gttgttggtcacatcattaatgatcatgatccgattgagtttgtaatatgtaatccagttactaagtcctggtctttcacttcctactcctgagtcattt 38254238  T
Q  430 caaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgactac 489  Q
    |||||||||||||||| || | ||||||||||| | |||| |||||||||||||||||||    
T  38254239 caaagaaaccatagttttgttggtataaacctcatattag-ttgctctttagatgactac 38254297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 22176769 - 22177242
Alignment:
Q  16 atggaagtgtctcaagacattgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaatttt 115  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||  || ||||    
T  22176769 atggaagtttctcaagacattacttttgagatattttcttggctaccggcaaaaagcatttgcaagttcaaatcaacttgcaactcatcctccgagtttt 22176868  T
Q  116 cagaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttca---ttcaacccgatcaaataagccaaaggta 212  Q
    | |||||| |  |||  |||||||||||||| | |||| |||| |||| |||||| ||||| |||||||   ||| ||||||||||||||| ||||| ||    
T  22176869 cggaagaaacactttccaaaacaaagcaggcacataatatgtttgggagggatgacacatgcttcttcattcttcgacccgatcaaataagtcaaagtta 22176968  T
Q  213 cacaaaaagagtagagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcagtttgtgtctta 312  Q
    |||  ||| ||||||||  |||||||| ||| || | ||||||||||| |||||||||||  |||||||||| || ||||||||||||||||||||||||    
T  22176969 cactgaaatagtagagtcacattctttgcctcaagatcgacaatcttctggtgcccctaaacaagctttgagattcctatcaaattcagtttgtgtctta 22177068  T
Q  313 gcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttccattc 412  Q
    | ||||||||||||||||||||||||  |||||| ||||| ||||||    ||||||||| | || || |||| ||| |||||||| ||||||||  |||    
T  22177069 ggttctagtaatggtctagttgttgg-gacaccactaatggtcatgattggattgagtttgtaatatgtaatctagttacaaagtcctggtcttcacttc 22177167  T
Q  413 ctacccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgact 487  Q
    |||| || |||||  |||||||||| ||||||| || | ||||||||||| ||||||||||||||||||||||||    
T  22177168 ctactcctgagtcatttcaaagaaatcatagttttgctggtataaacctcatgttagattgctctttagatgact 22177242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 4355120 - 4355589
Alignment:
Q  16 atggaagtgtctcaagacattgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaatttt 115  Q
    ||||||||  ||| ||| |||||||||||||||||||| ||| |||| | ||| ||| |||||||||| || |||||||||||||||  |  || |||||    
T  4355120 atggaagtccctcgagatattgcttttgagatattttcatggttaccggcaaagagcgtttgcaagcttaactcaacttgcaactcagtcactggatttt 4355219  T
Q  116 cagaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattcaacccgatcaaataagccaaaggtacac 215  Q
    |||||||| | ||||| |||| ||||||| |||| ||| |  | |||| |||||| |||||  ||||||| |||||||| |  |||| ||||| ||||      
T  4355220 cagaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaagtacgt 4355319  T
Q  216 aaaaagagtagagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcagtttgtgtcttagct 315  Q
    ||||||||| ||||| ||| || |||||||| || |||||||||| ||||  ||| | || | | | || || ||||||||||||  | |||||||||||    
T  4355320 aaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagct 4355419  T
Q  316 tctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttccattccta 415  Q
    ||  |||||||| || || || | || ||||||||||||||||  ||||||||||||||||| |  |||||| |||| |||| | |||||| ||||||||    
T  4355420 tcaggtaatggtttacttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattccta 4355519  T
Q  416 cccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatga 485  Q
    |||| ||||| ||||||||||| |||  || || || ||||||| || ||||||||| ||||| ||||||    
T  4355520 ccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagatttctcttcagatga 4355589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 4675792 - 4675323
Alignment:
Q  16 atggaagtgtctcaagacattgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaatttt 115  Q
    ||||||||  ||| ||| |||||||||||||||||||| ||| |||| | ||| ||| |||||||||| || |||||||||||||||  |  || |||||    
T  4675792 atggaagtccctcgagatattgcttttgagatattttcatggttaccggcaaagagcgtttgcaagcttaactcaacttgcaactcagtcactggatttt 4675693  T
Q  116 cagaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattcaacccgatcaaataagccaaaggtacac 215  Q
    |||||||| | ||||| |||| ||||||| |||| ||| |  | |||| |||||| |||||  ||||||| |||||||| |  |||| ||||| ||||      
T  4675692 cagaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaagtacgt 4675593  T
Q  216 aaaaagagtagagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcagtttgtgtcttagct 315  Q
    ||||||||| ||||| ||| || |||||||| || |||||||||| ||||  ||| | || | | | || || ||||||||||||  | |||||||||||    
T  4675592 aaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagct 4675493  T
Q  316 tctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttccattccta 415  Q
    ||  |||||||| || || || | || ||||||||||||||||  ||||||||||||||||| |  |||||| |||| |||| | |||||| ||||||||    
T  4675492 tcaggtaatggtttacttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattccta 4675393  T
Q  416 cccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatga 485  Q
    |||| ||||| ||||||||||| |||  || || || ||||||| || ||||||||| ||||| ||||||    
T  4675392 ccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagatttctcttcagatga 4675323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 277 - 489
Target Start/End: Original strand, 20656611 - 20656823
Alignment:
Q  277 gctttgagttttctatcaaattcagtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttca 376  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||   |    
T  20656611 gctttgagtttcctatcaaattcagtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgatttgattgagtttggaa 20656710  T
Q  377 tctgcaatccagtcacaaagtcttggtcttccattcctacccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctc 476  Q
      || |||||||| |||||||||||||||||  |||| ||||   ||||  |||||||||||||||||| || |  |||||||||| | |||||||||||    
T  20656711 aatgtaatccagttacaaagtcttggtcttcacttcccacccgttagtcatttcaaagaaaccatagttttgctgatataaacctcattttagattgctc 20656810  T
Q  477 tttagatgactac 489  Q
    |||||||||||||    
T  20656811 tttagatgactac 20656823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 20656475 - 20656283
Alignment:
Q  297 ttcagtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaag 396  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  | |||||  || | || || |||||||| ||||||    
T  20656475 ttcagtttgtgtcttagcttatagtaatgatctagttgttggtcacaccattaatgatcatgattcgattgaaattgtaatatgtaatccagttacaaag 20656376  T
Q  397 tcttggtcttccattcctacccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgactac 489  Q
    || ||||||||  |||||||||| |||||  |||||||||| ||||||| || |  |||||||||| |||||||||||| |||||||||||||    
T  20656375 tcctggtcttcacttcctacccctgagtcatttcaaagaaatcatagttttgctgatataaacctcatgttagattgctatttagatgactac 20656283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 302661 - 302590
Alignment:
Q  16 atggaagtgtctcaagacattgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaa 87  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||    
T  302661 atggaagtttctcaagacattgcttttgagatattttcttggctaccggcaagaagcatttgcaagttcaaa 302590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 487
Target Start/End: Complemental strand, 12036338 - 12036216
Alignment:
Q  365 ttgagtttttcatctgcaatccagtcacaaagtcttggtcttccattcctacccccgagtcgcttcaaagaaaccatagttctggtagtataaacctcgt 464  Q
    |||||||| | || || ||| |||| |||||||| ||||||||  |||||||||| |||||  |||||||||||||||||| || |  |||||||||| |    
T  12036338 ttgagtttgtaatatgtaattcagttacaaagtcctggtcttcacttcctaccccggagtcatttcaaagaaaccatagttttgctgatataaacctcat 12036239  T
Q  465 gttagattgctctttagatgact 487  Q
    ||||||||||||| |||||||||    
T  12036238 gttagattgctctatagatgact 12036216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 12036371 - 12036430
Alignment:
Q  300 agtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatga 359  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  12036371 agtttgtgtcttagcttgtagtaatgatctagttgttggtcacaccattaacgatcatga 12036430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 20656595 - 20656560
Alignment:
Q  297 ttcagtttgtgtcttagcttctagtaatggtctagt 332  Q
    ||||||||||||||||||||||||||||||||||||    
T  20656595 ttcagtttgtgtcttagcttctagtaatggtctagt 20656560  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 34233321 - 34233215
Alignment:
Q  34 attgcttttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaattttcagaagaagctgttttta 133  Q
    |||||||| ||||||||||| |||||||| | ||| |  ||||||||| |||||||||||||  | |||| ||   |||||||||||||| |   |||||    
T  34233321 attgctttcgagatattttcatggctaccagcaaagattatttgcaagttcaaatcaacttgtgagtcattctccaaattttcagaagaaaccactttta 34233222  T
Q  134 aaacaaa 140  Q
    |||||||    
T  34233221 aaacaaa 34233215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 485
Target Start/End: Original strand, 12036472 - 12036504
Alignment:
Q  453 tataaacctcgtgttagattgctctttagatga 485  Q
    |||||||||| ||||||||||||||||||||||    
T  12036472 tataaacctcatgttagattgctctttagatga 12036504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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