View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16988_low_4 (Length: 470)

Name: NF16988_low_4
Description: NF16988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16988_low_4
NF16988_low_4
[»] chr7 (5 HSPs)
chr7 (17-309)||(42901451-42901747)
chr7 (380-454)||(42901314-42901388)
chr7 (272-309)||(43352795-43352832)
chr7 (349-381)||(6980957-6980989)
chr7 (349-381)||(48583311-48583343)
[»] chr1 (4 HSPs)
chr1 (350-401)||(44382435-44382486)
chr1 (349-392)||(33734215-33734259)
chr1 (353-399)||(39128196-39128242)
chr1 (353-397)||(421138-421182)
[»] chr2 (1 HSPs)
chr2 (353-387)||(5913544-5913578)
[»] scaffold0312 (1 HSPs)
scaffold0312 (353-397)||(9389-9433)
[»] chr3 (1 HSPs)
chr3 (275-303)||(36738287-36738315)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 42901747 - 42901451
Alignment:
Q  17 aagaattaggttgattaatattgtagaagaatcatagataatatcaaatttcattattatt---gtaaagattttggtcacatataaagttaaatgtaca 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||| |    
T  42901747 aagaattagggtgattaatattgtagaagaatcatagataatatcaaatttcattattattattgtaaagattttggtcacatacaaagttaaatgtaaa 42901648  T
Q  114 agattcgaggattaattgtgaagtctaaaggagagaaaagttgcatagtgtta-ttttgcaaatgtggtttgattaggttgacaaccttttactgaagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42901647 agattcgaggattaattgtgaagtctaaaggagagaaaagttgcatagtgttacttttgcaaatgtggtttgattaggtggacaaccttttactgaagtt 42901548  T
Q  213 gaagtcaaagtaaatgtgagcattgaatgaaggaagaatatgttgtgtttcgaaaataattaggtgatattggtcaaccacaatatcacaaatgtat 309  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| | ||| ||||||||||||    
T  42901547 gaagtcaaagtaaatgtgagcattgaatgaaggaaggatatgttgtgtctcgaaaataattaggtgatattggttaactataatgtcacaaatgtat 42901451  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 42901388 - 42901314
Alignment:
Q  380 caatgtcatccaaatgctacccgttgtgtctaaatggatatccatcaaagtaccacatggaatagtggaaataac 454  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42901388 caatgtcatccaaatgctatccgttgtgtctaagtggatatccatcaaagtaccacatggaatagtggaaataac 42901314  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 43352795 - 43352832
Alignment:
Q  272 ttaggtgatattggtcaaccacaatatcacaaatgtat 309  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  43352795 ttaggtgatattagtcaaccacaatatcacaagtgtat 43352832  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 6980957 - 6980989
Alignment:
Q  349 ccacttgtaatattgtggttggccaatgtcaca 381  Q
    |||||||||| ||||||||||||||||||||||    
T  6980957 ccacttgtaacattgtggttggccaatgtcaca 6980989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 48583343 - 48583311
Alignment:
Q  349 ccacttgtaatattgtggttggccaatgtcaca 381  Q
    |||||||| ||||||||||||||||||||||||    
T  48583343 ccacttgttatattgtggttggccaatgtcaca 48583311  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 44382435 - 44382486
Alignment:
Q  350 cacttgtaatattgtggttggccaatgtcacaatgtcatccaaatgctaccc 401  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  44382435 cacttgtgatattgtggttggccaatgtcacaatgtcacccaagtgctaccc 44382486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 33734259 - 33734215
Alignment:
Q  349 ccacttgtaatattgtggttggccaatgtca-caatgtcatccaa 392  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  33734259 ccacttgtaatattgtggttggccaatgtcaccaatgtcacccaa 33734215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 39128242 - 39128196
Alignment:
Q  353 ttgtaatattgtggttggccaatgtcacaatgtcatccaaatgctac 399  Q
    |||||||||||| ||||| |||| ||||||||||| |||||||||||    
T  39128242 ttgtaatattgttgttggtcaatatcacaatgtcacccaaatgctac 39128196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 421182 - 421138
Alignment:
Q  353 ttgtaatattgtggttggccaatgtcacaatgtcatccaaatgct 397  Q
    |||||| |||||||||| ||||||||||||||||| |||| ||||    
T  421182 ttgtaacattgtggttgaccaatgtcacaatgtcacccaagtgct 421138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 5913578 - 5913544
Alignment:
Q  353 ttgtaatattgtggttggccaatgtcacaatgtca 387  Q
    |||||| ||||||||||||||||||||||||||||    
T  5913578 ttgtaagattgtggttggccaatgtcacaatgtca 5913544  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 9389 - 9433
Alignment:
Q  353 ttgtaatattgtggttggccaatgtcacaatgtcatccaaatgct 397  Q
    |||||| |||||||||| ||||||||||||||||| |||| ||||    
T  9389 ttgtaacattgtggttgaccaatgtcacaatgtcacccaagtgct 9433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 36738287 - 36738315
Alignment:
Q  275 ggtgatattggtcaaccacaatatcacaa 303  Q
    |||||||||||||||||||||||||||||    
T  36738287 ggtgatattggtcaaccacaatatcacaa 36738315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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